Information for 5-AYCTTGGCTYMC (Motif 9)


Reverse Opposite:

p-value:1e-12
log p-value:-2.893e+01
Information Content per bp:1.562
Number of Target Sequences with motif55.0
Percentage of Target Sequences with motif6.12%
Number of Background Sequences with motif3.4
Percentage of Background Sequences with motif0.40%
Average Position of motif in Targets42.4 +/- 20.7bp
Average Position of motif in Background11.8 +/- 1.6bp
Strand Bias (log2 ratio + to - strand density)-0.9
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

GCR1(MacIsaac)/Yeast

Match Rank:1
Score:0.68
Offset:4
Orientation:forward strand
Alignment:AYCTTGGCTYMC-
----GGGCTTCCA

RIM101/MA0368.1/Jaspar

Match Rank:2
Score:0.68
Offset:2
Orientation:reverse strand
Alignment:AYCTTGGCTYMC
--CTTGGCG---

GCR1/Literature(Harbison)/Yeast

Match Rank:3
Score:0.67
Offset:5
Orientation:forward strand
Alignment:AYCTTGGCTYMC--
-----GGCTTCCAC

POL010.1_DCE_S_III/Jaspar

Match Rank:4
Score:0.67
Offset:5
Orientation:reverse strand
Alignment:AYCTTGGCTYMC
-----NGCTN--

GCR1/MA0304.1/Jaspar

Match Rank:5
Score:0.66
Offset:5
Orientation:reverse strand
Alignment:AYCTTGGCTYMC-
-----GGCTTCCA

ARF1(ABI3/VP1)/Arabidopsis thaliana/AthaMap

Match Rank:6
Score:0.66
Offset:2
Orientation:forward strand
Alignment:AYCTTGGCTYMC-
--CTTGTCTCCCA

NFIX/MA0671.1/Jaspar

Match Rank:7
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:AYCTTGGCTYMC
--NTTGGCANN-

CRZ1/MA0285.1/Jaspar

Match Rank:8
Score:0.64
Offset:3
Orientation:reverse strand
Alignment:AYCTTGGCTYMC
---GTGGCTNNG

NFIC/MA0161.1/Jaspar

Match Rank:9
Score:0.63
Offset:3
Orientation:forward strand
Alignment:AYCTTGGCTYMC
---TTGGCA---

GCR2(MacIsaac)/Yeast

Match Rank:10
Score:0.62
Offset:6
Orientation:forward strand
Alignment:AYCTTGGCTYMC-
------GCTTCCN