Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 899)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 845)	% of Background Sequences with Motif
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e-5	-1.247e+01	0.0015	82.0	9.12%	32.1	3.80%
PABPC1(?)/MEL-PABC1-CLIP-Seq(GSE69755)/Homer	HAATAAAGNN	1e-4	-9.273e+00	0.0182	138.0	15.35%	79.2	9.38%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e-3	-9.162e+00	0.0182	29.0	3.23%	6.1	0.72%
SeqBias: TA-repeat	TATATATATA	1e-3	-7.778e+00	0.0405	229.0	25.47%	158.2	18.73%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e-3	-7.477e+00	0.0438	57.0	6.34%	25.8	3.06%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e-3	-7.260e+00	0.0453	14.0	1.56%	1.0	0.12%
Unknown2/Drosophila-Promoters/Homer	CATCMCTA	1e-3	-6.983e+00	0.0513	54.0	6.01%	24.7	2.92%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e-2	-6.660e+00	0.0620	47.0	5.23%	20.7	2.45%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e-2	-6.152e+00	0.0916	67.0	7.45%	35.4	4.19%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e-2	-6.150e+00	0.0916	60.0	6.67%	30.4	3.60%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-2	-6.143e+00	0.0916	33.0	3.67%	12.2	1.44%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e-2	-6.056e+00	0.0916	12.0	1.33%	1.5	0.18%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-2	-6.006e+00	0.0916	48.0	5.34%	22.4	2.65%
PHA-4(Forkhead)/cElegans-Embryos-PHA4-ChIP-Seq(modEncode)/Homer	KTGTTTGC	1e-2	-5.796e+00	0.0916	150.0	16.69%	101.5	12.01%
SeqBias: GA-repeat	GAGAGAGAGA	1e-2	-5.743e+00	0.0916	300.0	33.37%	230.7	27.30%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e-2	-5.282e+00	0.1092	13.0	1.45%	2.9	0.34%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e-2	-5.282e+00	0.1092	13.0	1.45%	2.7	0.32%
Pho4(bHLH)/Yeast-Pho4-ChIP-Seq(GSE29506)/Homer	AAGCACGTGBGD	1e-2	-5.282e+00	0.1092	13.0	1.45%	2.2	0.26%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-2	-5.241e+00	0.1092	54.0	6.01%	28.5	3.38%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e-2	-5.191e+00	0.1092	32.0	3.56%	13.2	1.56%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-2	-5.168e+00	0.1092	66.0	7.34%	37.9	4.48%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e-2	-5.112e+00	0.1092	112.0	12.46%	73.4	8.68%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e-2	-5.105e+00	0.1092	59.0	6.56%	32.9	3.90%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e-2	-4.959e+00	0.1132	46.0	5.12%	23.8	2.82%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e-2	-4.862e+00	0.1197	18.0	2.00%	5.1	0.60%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e-2	-4.835e+00	0.1197	34.0	3.78%	15.7	1.86%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e-2	-4.782e+00	0.1197	16.0	1.78%	4.3	0.51%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e-2	-4.782e+00	0.1197	16.0	1.78%	4.9	0.58%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e-2	-4.735e+00	0.1197	14.0	1.56%	3.7	0.43%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e-2	-4.735e+00	0.1197	14.0	1.56%	3.5	0.42%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e-2	-4.668e+00	0.1197	21.0	2.34%	7.4	0.88%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e-1	-4.414e+00	0.1464	22.0	2.45%	9.0	1.06%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e-1	-4.295e+00	0.1552	9.0	1.00%	1.7	0.20%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e-1	-4.295e+00	0.1552	9.0	1.00%	1.5	0.18%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e-1	-4.267e+00	0.1552	20.0	2.22%	7.8	0.92%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e-1	-4.159e+00	0.1680	39.0	4.34%	20.3	2.40%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e-1	-4.112e+00	0.1713	82.0	9.12%	53.3	6.31%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e-1	-4.030e+00	0.1810	141.0	15.68%	102.5	12.13%
AARE(HLH)/mES-cMyc-ChIP-Seq/Homer	GATTGCATCA	1e-1	-3.981e+00	0.1853	6.0	0.67%	0.9	0.10%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-1	-3.877e+00	0.2004	19.0	2.11%	8.0	0.95%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e-1	-3.724e+00	0.2278	8.0	0.89%	1.1	0.14%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e-1	-3.655e+00	0.2384	23.0	2.56%	10.1	1.19%
GAGA-repeat/SacCer-Promoters/Homer	CTYTCTYTCTCTCTC	1e-1	-3.511e+00	0.2688	177.0	19.69%	136.8	16.20%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e-1	-3.498e+00	0.2688	18.0	2.00%	7.7	0.92%
LHY(Myb)/Seedling-LHY-ChIP-Seq(GSE52175)/Homer	ADAAATATCT	1e-1	-3.470e+00	0.2688	65.0	7.23%	42.7	5.05%
PQM-1(?)/cElegans-L3-ChIP-Seq(modEncode)/Homer	ACTGATAAGA	1e-1	-3.432e+00	0.2719	13.0	1.45%	4.2	0.50%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e-1	-3.382e+00	0.2798	132.0	14.68%	98.7	11.69%
Pho2(bHLH)/Yeast-Pho2-ChIP-Seq(GSE29506)/Homer	CCCACGTGCT	1e-1	-3.333e+00	0.2819	16.0	1.78%	6.7	0.79%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-1	-3.333e+00	0.2819	16.0	1.78%	6.4	0.76%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e-1	-3.316e+00	0.2819	5.0	0.56%	0.0	0.00%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e-1	-3.316e+00	0.2819	5.0	0.56%	0.0	0.00%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e-1	-3.164e+00	0.3146	7.0	0.78%	1.9	0.22%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-1	-3.132e+00	0.3184	17.0	1.89%	7.7	0.91%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-1	-3.089e+00	0.3263	31.0	3.45%	17.1	2.03%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e-1	-3.078e+00	0.3263	63.0	7.01%	42.4	5.02%
Unknown4/Arabidopsis-Promoters/Homer	CKTCKTCTTY	1e-1	-3.007e+00	0.3417	36.0	4.00%	21.4	2.53%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e-1	-2.978e+00	0.3454	60.0	6.67%	40.7	4.82%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e-1	-2.973e+00	0.3454	55.0	6.12%	36.8	4.36%
Unknown5/Drosophila-Promoters/Homer	GCTGATAASV	1e-1	-2.963e+00	0.3454	18.0	2.00%	8.9	1.05%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e-1	-2.963e+00	0.3454	18.0	2.00%	8.0	0.95%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e-1	-2.924e+00	0.3454	51.0	5.67%	33.7	3.99%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-1	-2.689e+00	0.4243	20.0	2.22%	10.8	1.28%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e-1	-2.656e+00	0.4314	24.0	2.67%	13.9	1.65%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e-1	-2.654e+00	0.4314	28.0	3.11%	16.6	1.97%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e-1	-2.652e+00	0.4314	4.0	0.44%	0.0	0.00%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e-1	-2.652e+00	0.4314	4.0	0.44%	0.0	0.00%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e-1	-2.616e+00	0.4314	6.0	0.67%	1.4	0.17%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e-1	-2.616e+00	0.4314	6.0	0.67%	1.9	0.23%
ELT-3(Gata)/cElegans-L1-ELT3-ChIP-Seq(modEncode)/Homer	AWTGATAAGA	1e-1	-2.576e+00	0.4314	21.0	2.34%	11.1	1.31%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e-1	-2.564e+00	0.4314	25.0	2.78%	14.2	1.68%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e-1	-2.503e+00	0.4461	18.0	2.00%	9.9	1.17%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e-1	-2.480e+00	0.4502	139.0	15.46%	110.8	13.12%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e-1	-2.417e+00	0.4730	41.0	4.56%	27.3	3.23%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e-1	-2.405e+00	0.4730	12.0	1.33%	5.4	0.63%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e-1	-2.405e+00	0.4730	12.0	1.33%	5.5	0.65%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-1	-2.404e+00	0.4730	27.0	3.00%	16.7	1.97%
IBL1(bHLH)/Seedling-IBL1-ChIP-Seq(GSE51120)/Homer	CACGTGCC	1e-1	-2.330e+00	0.4891	60.0	6.67%	43.8	5.19%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-2.263e+00	0.5164	56.0	6.23%	40.6	4.80%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e0	-2.210e+00	0.5373	10.0	1.11%	4.8	0.57%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-2.206e+00	0.5373	21.0	2.34%	12.8	1.51%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e0	-2.206e+00	0.5373	21.0	2.34%	12.8	1.51%
EGL-5(Homeobox)/cElegans-L3-EGL5-ChIP-Seq(modEncode)/Homer	ATTTAATGGG	1e0	-2.148e+00	0.5510	73.0	8.12%	55.9	6.61%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-2.128e+00	0.5510	22.0	2.45%	13.9	1.65%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-2.128e+00	0.5510	22.0	2.45%	13.7	1.63%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e0	-2.116e+00	0.5510	129.0	14.35%	104.2	12.34%
TATA-box/Drosophila-Promoters/Homer	CTATAAAAGCSV	1e0	-2.084e+00	0.5510	5.0	0.56%	1.7	0.20%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-2.084e+00	0.5510	5.0	0.56%	1.9	0.23%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-2.084e+00	0.5510	5.0	0.56%	1.9	0.22%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-2.084e+00	0.5510	5.0	0.56%	1.5	0.18%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	-2.045e+00	0.5563	28.0	3.11%	18.1	2.15%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e0	-2.013e+00	0.5682	58.0	6.45%	43.7	5.17%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-2.009e+00	0.5682	8.0	0.89%	3.8	0.45%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-2.009e+00	0.5682	8.0	0.89%	3.3	0.39%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e0	-2.009e+00	0.5682	8.0	0.89%	3.4	0.40%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e0	-1.988e+00	0.5682	3.0	0.33%	0.0	0.00%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-1.988e+00	0.5682	3.0	0.33%	1.0	0.12%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e0	-1.988e+00	0.5682	3.0	0.33%	0.0	0.00%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-1.988e+00	0.5682	3.0	0.33%	1.0	0.12%
SeqBias: polyC-repeat	CCCCCCCCCC	1e0	-1.905e+00	0.5816	756.0	84.09%	693.4	82.08%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	-1.883e+00	0.5830	21.0	2.34%	13.0	1.54%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-1.883e+00	0.5830	21.0	2.34%	13.8	1.63%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e0	-1.882e+00	0.5830	26.0	2.89%	17.4	2.06%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e0	-1.852e+00	0.5898	72.0	8.01%	56.6	6.70%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e0	-1.840e+00	0.5912	9.0	1.00%	4.7	0.56%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e0	-1.815e+00	0.6002	39.0	4.34%	28.9	3.42%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e0	-1.815e+00	0.6002	13.0	1.45%	7.6	0.91%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e0	-1.815e+00	0.6002	13.0	1.45%	7.4	0.88%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-1.798e+00	0.6002	6.0	0.67%	2.5	0.30%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-1.798e+00	0.6002	6.0	0.67%	2.9	0.34%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-1.798e+00	0.6002	6.0	0.67%	2.7	0.32%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e0	-1.726e+00	0.6204	14.0	1.56%	8.2	0.97%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-1.618e+00	0.6731	7.0	0.78%	3.2	0.38%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-1.618e+00	0.6731	7.0	0.78%	3.5	0.42%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-1.618e+00	0.6731	7.0	0.78%	3.5	0.42%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e0	-1.610e+00	0.6731	11.0	1.22%	6.3	0.75%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-1.591e+00	0.6798	40.0	4.45%	30.8	3.65%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-1.573e+00	0.6863	4.0	0.44%	1.9	0.23%
Unknown6/Drosophila-Promoters/Homer	AATTTTAAAA	1e0	-1.540e+00	0.7030	42.0	4.67%	32.5	3.85%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e0	-1.475e+00	0.7441	24.0	2.67%	17.2	2.04%
Zelda(Zf)/Embryo-zld-ChIP-Seq(GSE65441)/Homer	KBCTACCTGW	1e0	-1.459e+00	0.7500	13.0	1.45%	8.7	1.03%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	-1.394e+00	0.7935	41.0	4.56%	32.4	3.84%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e0	-1.392e+00	0.7935	20.0	2.22%	14.1	1.66%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e0	-1.375e+00	0.7935	5.0	0.56%	3.0	0.35%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e0	-1.375e+00	0.7935	5.0	0.56%	3.0	0.35%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-1.349e+00	0.7973	15.0	1.67%	10.3	1.22%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e0	-1.349e+00	0.7973	15.0	1.67%	10.2	1.21%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e0	-1.348e+00	0.7973	28.0	3.11%	21.8	2.58%
RLR1?/SacCer-Promoters/Homer	WTTTTCYYTTTT	1e0	-1.348e+00	0.7973	28.0	3.11%	21.1	2.49%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-1.339e+00	0.7973	61.0	6.79%	50.3	5.95%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e0	-1.325e+00	0.7973	2.0	0.22%	0.0	0.00%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-1.325e+00	0.7973	2.0	0.22%	0.0	0.00%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e0	-1.325e+00	0.7973	2.0	0.22%	0.0	0.00%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	-1.325e+00	0.7973	2.0	0.22%	0.0	0.00%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-1.325e+00	0.7973	2.0	0.22%	0.5	0.06%
E-box/Drosophila-Promoters/Homer	AACAGCTGTTHN	1e0	-1.325e+00	0.7973	2.0	0.22%	0.4	0.05%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	-1.325e+00	0.7973	2.0	0.22%	0.0	0.00%
Cbf1(bHLH)/Yeast-Cbf1-ChIP-Seq(GSE29506)/Homer	TCACGTGAYH	1e0	-1.322e+00	0.7973	10.0	1.11%	6.8	0.81%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e0	-1.304e+00	0.7973	16.0	1.78%	11.8	1.40%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	-1.281e+00	0.7973	56.0	6.23%	46.5	5.51%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e0	-1.254e+00	0.7973	6.0	0.67%	3.1	0.37%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-1.254e+00	0.7973	6.0	0.67%	3.9	0.46%
PIF4(bHLH)/Seedling-PIF4-ChIP-Seq(GSE35315)/Homer	NNBCACGTGN	1e0	-1.221e+00	0.8040	42.0	4.67%	34.1	4.04%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-1.210e+00	0.8070	12.0	1.33%	8.6	1.01%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-1.209e+00	0.8070	26.0	2.89%	20.9	2.48%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e0	-1.192e+00	0.8106	35.0	3.89%	29.0	3.43%
SeqBias: polyA-repeat	AAAAAAAAAA	1e0	-1.188e+00	0.8106	786.0	87.43%	730.2	86.43%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-1.174e+00	0.8141	36.0	4.00%	29.5	3.49%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-1.170e+00	0.8141	7.0	0.78%	4.8	0.57%
Unknown4/Drosophila-Promoters/Homer	AAAAATACCRMA	1e0	-1.170e+00	0.8141	7.0	0.78%	4.6	0.55%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-1.164e+00	0.8141	28.0	3.11%	22.5	2.66%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-1.164e+00	0.8141	28.0	3.11%	22.3	2.64%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-1.141e+00	0.8141	21.0	2.34%	16.7	1.97%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e0	-1.116e+00	0.8286	22.0	2.45%	17.2	2.03%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e0	-1.110e+00	0.8286	40.0	4.45%	33.5	3.97%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-1.106e+00	0.8286	8.0	0.89%	5.7	0.67%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e0	-1.096e+00	0.8293	15.0	1.67%	11.8	1.40%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e0	-1.090e+00	0.8293	3.0	0.33%	1.8	0.21%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	-1.090e+00	0.8293	3.0	0.33%	1.6	0.18%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-1.090e+00	0.8293	3.0	0.33%	1.5	0.18%
FHY3(FAR1)/Arabidopsis-FHY3-ChIP-Seq(GSE30711)/Homer	HHCACGCGCBTN	1e0	-1.090e+00	0.8293	3.0	0.33%	1.6	0.19%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	-1.090e+00	0.8293	3.0	0.33%	1.9	0.23%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-1.090e+00	0.8293	3.0	0.33%	1.1	0.13%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e0	-1.073e+00	0.8293	33.0	3.67%	27.8	3.30%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e0	-1.068e+00	0.8293	43.0	4.78%	36.3	4.30%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e0	-1.066e+00	0.8293	16.0	1.78%	12.8	1.51%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-1.057e+00	0.8293	9.0	1.00%	7.0	0.82%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e0	-1.057e+00	0.8293	9.0	1.00%	6.3	0.75%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e0	-1.016e+00	0.8293	18.0	2.00%	14.5	1.71%
E-box/Arabidopsis-Promoters/Homer	GCCACGTG	1e0	-1.016e+00	0.8293	18.0	2.00%	14.7	1.74%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-9.895e-01	0.8463	39.0	4.34%	33.2	3.94%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-9.847e-01	0.8463	4.0	0.44%	2.4	0.28%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e0	-9.847e-01	0.8463	4.0	0.44%	2.1	0.25%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e0	-9.847e-01	0.8463	4.0	0.44%	2.9	0.34%
TOD6?/SacCer-Promoters/Homer	GCGATGAGMT	1e0	-9.847e-01	0.8463	4.0	0.44%	2.5	0.30%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-9.527e-01	0.8530	12.0	1.33%	9.5	1.13%
SeqBias: CG bias	SSSSSSSSSS	1e0	-9.516e-01	0.8530	428.0	47.61%	395.0	46.76%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e0	-9.445e-01	0.8530	43.0	4.78%	37.9	4.49%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e0	-9.320e-01	0.8561	56.0	6.23%	49.8	5.89%
Unknown3/Arabidopsis-Promoters/Homer	AYTAAACCGG	1e0	-9.212e-01	0.8606	5.0	0.56%	3.9	0.46%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e0	-9.076e-01	0.8675	24.0	2.67%	20.3	2.40%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-8.769e-01	0.8896	6.0	0.67%	4.1	0.49%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e0	-8.451e-01	0.9083	29.0	3.23%	25.5	3.02%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)	NNAYTTCCTGHN	1e0	-8.451e-01	0.9083	29.0	3.23%	25.3	2.99%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e0	-7.945e-01	0.9503	9.0	1.00%	7.8	0.92%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	-7.847e-01	0.9544	22.0	2.45%	19.0	2.25%
TATA-box/SacCer-Promoters/Homer	BBHWTATATA	1e0	-7.641e-01	0.9690	24.0	2.67%	21.8	2.58%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e0	-7.593e-01	0.9690	11.0	1.22%	9.1	1.08%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e0	-7.318e-01	0.9849	13.0	1.45%	11.8	1.40%
HLH-1(bHLH)/cElegans-Embryo-HLH1-ChIP-Seq(modEncode)/Homer	RACAGCTGTTBH	1e0	-7.318e-01	0.9849	13.0	1.45%	11.4	1.35%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-7.201e-01	0.9913	14.0	1.56%	12.4	1.47%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e0	-7.179e-01	0.9913	45.0	5.01%	41.7	4.94%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e0	-6.817e-01	1.0000	18.0	2.00%	16.8	1.99%
GEI-11(Myb?)/cElegans-L4-GEI11-ChIP-Seq(modEncode)/Homer	CCGACAYYTYACGGG	1e0	-6.621e-01	1.0000	1.0	0.11%	0.5	0.06%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e0	-6.621e-01	1.0000	1.0	0.11%	0.0	0.00%
Unknown2/Arabidopsis-Promoters/Homer	AAACGACGTCGTTTT	1e0	-6.621e-01	1.0000	1.0	0.11%	0.0	0.00%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e0	-6.621e-01	1.0000	1.0	0.11%	0.0	0.00%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-6.621e-01	1.0000	1.0	0.11%	0.0	0.00%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	-6.621e-01	1.0000	1.0	0.11%	0.0	0.00%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e0	-6.621e-01	1.0000	1.0	0.11%	0.6	0.07%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e0	-6.561e-01	1.0000	57.0	6.34%	53.2	6.30%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-6.469e-01	1.0000	2.0	0.22%	1.4	0.17%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e0	-6.469e-01	1.0000	2.0	0.22%	1.3	0.15%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-6.469e-01	1.0000	2.0	0.22%	1.3	0.15%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-6.356e-01	1.0000	3.0	0.33%	2.2	0.26%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e0	-6.338e-01	1.0000	25.0	2.78%	23.5	2.78%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-6.111e-01	1.0000	6.0	0.67%	5.8	0.68%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-6.111e-01	1.0000	6.0	0.67%	5.0	0.60%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e0	-6.045e-01	1.0000	7.0	0.78%	6.4	0.76%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-5.985e-01	1.0000	8.0	0.89%	7.1	0.85%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-5.875e-01	1.0000	10.0	1.11%	9.0	1.07%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-5.749e-01	1.0000	59.0	6.56%	56.2	6.66%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-5.700e-01	1.0000	39.0	4.34%	37.5	4.44%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-5.526e-01	1.0000	66.0	7.34%	63.1	7.48%
GAGA-repeat/Arabidopsis-Promoters/Homer	CTCTCTCTCY	1e0	-5.460e-01	1.0000	46.0	5.12%	44.3	5.24%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e0	-5.456e-01	1.0000	20.0	2.22%	19.4	2.30%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e0	-5.422e-01	1.0000	21.0	2.34%	20.9	2.48%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-5.323e-01	1.0000	24.0	2.67%	23.2	2.75%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e0	-5.202e-01	1.0000	28.0	3.11%	27.6	3.27%
PIF5ox(bHLH)/Arabidopsis-PIF5ox-ChIP-Seq(GSE35062)/Homer	BCACGTGVDN	1e0	-5.173e-01	1.0000	29.0	3.23%	28.9	3.43%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-5.088e-01	1.0000	59.0	6.56%	57.7	6.83%
SeqBias: C/A-bias	MMMMMMMMMM	1e0	-5.008e-01	1.0000	867.0	96.44%	815.4	96.52%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-4.455e-01	1.0000	14.0	1.56%	14.2	1.68%
Oct6(POU,Homeobox)/NPC-Oct6-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e0	-4.455e-01	1.0000	14.0	1.56%	14.5	1.71%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e0	-4.454e-01	1.0000	17.0	1.89%	17.9	2.12%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-4.444e-01	1.0000	19.0	2.11%	19.6	2.32%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e0	-4.430e-01	1.0000	21.0	2.34%	21.5	2.54%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e0	-4.421e-01	1.0000	22.0	2.45%	22.1	2.62%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-4.409e-01	1.0000	10.0	1.11%	10.1	1.19%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e0	-4.391e-01	1.0000	25.0	2.78%	25.6	3.03%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-4.346e-01	1.0000	8.0	0.89%	8.4	1.00%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e0	-4.296e-01	1.0000	7.0	0.78%	7.6	0.90%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e0	-4.296e-01	1.0000	7.0	0.78%	7.0	0.83%
SeqBias: G/A bias	RRRRRRRRRR	1e0	-4.189e-01	1.0000	876.0	97.44%	824.6	97.61%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-4.069e-01	1.0000	221.0	24.58%	214.4	25.38%
Unknown1/Arabidopsis-Promoters/Homer	RGGGTAWWWTHGTAA	1e0	-3.989e-01	1.0000	4.0	0.44%	4.6	0.55%
REB1/SacCer-Promoters/Homer	KCCGGGTAAYRR	1e0	-3.989e-01	1.0000	4.0	0.44%	4.2	0.50%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e0	-3.625e-01	1.0000	32.0	3.56%	33.7	3.99%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e0	-3.612e-01	1.0000	36.0	4.00%	37.5	4.44%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e0	-3.594e-01	1.0000	21.0	2.34%	23.0	2.72%
LIN-39(Homeobox)/cElegans.L3-LIN39-ChIP-Seq(modEncode)/Homer	ATGATTRATG	1e0	-3.556e-01	1.0000	46.0	5.12%	47.7	5.64%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-3.499e-01	1.0000	95.0	10.57%	95.2	11.27%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-3.424e-01	1.0000	13.0	1.45%	15.0	1.77%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	-3.411e-01	1.0000	2.0	0.22%	2.5	0.29%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-3.395e-01	1.0000	66.0	7.34%	67.8	8.03%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e0	-3.334e-01	1.0000	11.0	1.22%	12.6	1.49%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-3.334e-01	1.0000	11.0	1.22%	12.8	1.51%
SOC1(MADS)/Seedling-SOC1-ChIP-Seq(GSE45846)/Homer	TWCCAWWTWTGG	1e0	-3.334e-01	1.0000	11.0	1.22%	12.8	1.51%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-3.053e-01	1.0000	37.0	4.12%	39.6	4.68%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e0	-3.043e-01	1.0000	34.0	3.78%	36.4	4.30%
Tal1	CATCTG	1e0	-3.043e-01	1.0000	34.0	3.78%	36.6	4.34%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e0	-3.022e-01	1.0000	7.0	0.78%	8.4	1.00%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e0	-3.022e-01	1.0000	7.0	0.78%	8.7	1.03%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	-2.978e-01	1.0000	26.0	2.89%	28.1	3.32%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e0	-2.895e-01	1.0000	6.0	0.67%	7.4	0.88%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	-2.895e-01	1.0000	6.0	0.67%	7.9	0.93%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e0	-2.844e-01	1.0000	19.0	2.11%	21.0	2.49%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e0	-2.706e-01	1.0000	15.0	1.67%	17.4	2.06%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-2.670e-01	1.0000	1.0	0.11%	1.4	0.16%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-2.670e-01	1.0000	1.0	0.11%	1.6	0.19%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-2.670e-01	1.0000	1.0	0.11%	1.9	0.23%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-2.670e-01	1.0000	1.0	0.11%	1.4	0.17%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-2.670e-01	1.0000	1.0	0.11%	1.4	0.17%
SeqBias: A/T bias	WWWWWWWWWW	1e0	-2.610e-01	1.0000	591.0	65.74%	568.6	67.30%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e0	-2.526e-01	1.0000	4.0	0.44%	5.2	0.62%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e0	-2.497e-01	1.0000	30.0	3.34%	33.9	4.01%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-2.408e-01	1.0000	10.0	1.11%	12.9	1.53%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e0	-2.079e-01	1.0000	15.0	1.67%	18.6	2.20%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-1.968e-01	1.0000	13.0	1.45%	16.9	2.00%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-1.960e-01	1.0000	6.0	0.67%	8.9	1.05%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-1.840e-01	1.0000	2.0	0.22%	3.4	0.40%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-1.791e-01	1.0000	5.0	0.56%	7.5	0.88%
SPCH(bHLH)/Seedling-SPCH-ChIP-Seq(GSE57497)/Homer	WNBCACGTGA	1e0	-1.747e-01	1.0000	34.0	3.78%	39.4	4.67%
SUT1?/SacCer-Promoters/Homer	CCCCGCGC	1e0	-1.659e-01	1.0000	237.0	26.36%	240.1	28.41%
Dorsal(RHD)/Embryo-dl-ChIP-Seq(GSE65441)/Homer	GGGAAAAMCCCG	1e0	-1.584e-01	1.0000	4.0	0.44%	6.5	0.77%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-1.584e-01	1.0000	4.0	0.44%	6.1	0.72%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e0	-1.557e-01	1.0000	8.0	0.89%	11.1	1.31%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e0	-1.528e-01	1.0000	14.0	1.56%	18.4	2.18%
CES-1(Homeobox)/cElegans-L1-CES1-ChIP-Seq(modEncode)/Homer	AAATTSAATTTN	1e0	-1.473e-01	1.0000	22.0	2.45%	27.1	3.20%
RBFox2(?)/Heart-RBFox2-CLIP-Seq(GSE57926)/Homer	TGCATGCA	1e0	-1.429e-01	1.0000	58.0	6.45%	65.8	7.79%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e0	-1.394e-01	1.0000	161.0	17.91%	168.5	19.95%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e0	-1.327e-01	1.0000	3.0	0.33%	5.5	0.66%
caudal(Homeobox)/Drosophila-Embryos-ChIP-Chip(modEncode)/Homer	GGYCATAAAW	1e0	-1.315e-01	1.0000	28.0	3.11%	34.2	4.05%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-1.315e-01	1.0000	28.0	3.11%	34.4	4.07%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e0	-1.267e-01	1.0000	26.0	2.89%	32.2	3.81%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e0	-1.240e-01	1.0000	16.0	1.78%	21.9	2.59%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-1.203e-01	1.0000	1.0	0.11%	2.4	0.29%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	-1.203e-01	1.0000	1.0	0.11%	2.0	0.24%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-1.203e-01	1.0000	1.0	0.11%	2.4	0.29%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e0	-1.203e-01	1.0000	1.0	0.11%	3.0	0.35%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-1.203e-01	1.0000	1.0	0.11%	2.7	0.32%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e0	-1.203e-01	1.0000	1.0	0.11%	2.2	0.26%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e0	-1.203e-01	1.0000	1.0	0.11%	2.8	0.33%
SeqBias: CA-repeat	CACACACACA	1e0	-1.180e-01	1.0000	187.0	20.80%	195.9	23.19%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-1.172e-01	1.0000	9.0	1.00%	13.9	1.65%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-1.084e-01	1.0000	13.0	1.45%	19.0	2.24%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e0	-1.079e-01	1.0000	8.0	0.89%	12.4	1.46%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e0	-1.079e-01	1.0000	8.0	0.89%	12.2	1.45%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-1.020e-01	1.0000	57.0	6.34%	66.1	7.83%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-9.970e-02	1.0000	2.0	0.22%	4.6	0.54%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	-9.077e-02	1.0000	115.0	12.79%	126.1	14.93%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	-8.917e-02	1.0000	10.0	1.11%	15.8	1.88%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-7.919e-02	1.0000	13.0	1.45%	19.9	2.36%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e0	-7.905e-02	1.0000	26.0	2.89%	34.6	4.09%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-7.769e-02	1.0000	3.0	0.33%	6.3	0.75%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	-7.383e-02	1.0000	8.0	0.89%	13.7	1.62%
Initiator/Drosophila-Promoters/Homer	NTCAGTYG	1e0	-6.956e-02	1.0000	54.0	6.01%	65.5	7.75%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e0	-6.529e-02	1.0000	7.0	0.78%	12.2	1.44%
Unknown1(NR/Ini-like)/Drosophila-Promoters/Homer	MYGGTCACACTG	1e0	-6.005e-02	1.0000	4.0	0.44%	8.6	1.02%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e0	-5.742e-02	1.0000	24.0	2.67%	33.2	3.93%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e0	-5.633e-02	1.0000	1.0	0.11%	3.5	0.41%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-5.386e-02	1.0000	2.0	0.22%	5.9	0.70%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-5.386e-02	1.0000	2.0	0.22%	5.4	0.63%
PCF/Arabidopsis-Promoters/Homer	NNWWWTGGGCYTDDN	1e0	-5.386e-02	1.0000	2.0	0.22%	5.6	0.67%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-5.368e-02	1.0000	38.0	4.23%	49.5	5.86%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e0	-5.315e-02	1.0000	29.0	3.23%	39.2	4.64%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e0	-5.190e-02	1.0000	47.0	5.23%	59.5	7.04%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e0	-4.646e-02	1.0000	5.0	0.56%	10.5	1.24%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e0	-4.606e-02	1.0000	122.0	13.57%	138.2	16.36%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-3.604e-02	1.0000	6.0	0.67%	12.5	1.49%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-3.604e-02	1.0000	6.0	0.67%	12.5	1.48%
KANADI1(Myb)/Seedling-KAN1-ChIP-Seq(GSE48081)/Homer	ARGAATAWWN	1e0	-2.943e-02	1.0000	50.0	5.56%	65.1	7.70%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-2.681e-02	1.0000	1.0	0.11%	4.4	0.52%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-2.575e-02	1.0000	9.0	1.00%	17.8	2.11%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e0	-2.575e-02	1.0000	3.0	0.33%	8.5	1.01%
SeqBias: GCW-triplet	GCWGCWGCWGCW	1e0	-2.507e-02	1.0000	848.0	94.33%	812.3	96.15%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-2.383e-02	1.0000	23.0	2.56%	35.4	4.19%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e0	-2.160e-02	1.0000	4.0	0.44%	10.3	1.22%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-1.540e-02	1.0000	2.0	0.22%	7.8	0.92%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-1.461e-02	1.0000	79.0	8.79%	100.3	11.87%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-1.457e-02	1.0000	3.0	0.33%	9.0	1.07%
Trl(Zf)/S2-GAGAfactor-ChIP-Seq(GSE40646)/Homer	RGAGAGAG	1e0	-1.418e-02	1.0000	56.0	6.23%	75.0	8.88%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-1.286e-02	1.0000	1.0	0.11%	5.2	0.61%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-1.212e-02	1.0000	22.0	2.45%	36.8	4.36%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-1.075e-02	1.0000	17.0	1.89%	31.0	3.67%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-6.621e-03	1.0000	19.0	2.11%	34.1	4.04%
SFP1/SacCer-Promoters/Homer	DDAAAAATTTTY	1e0	-6.181e-03	1.0000	1.0	0.11%	6.5	0.77%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e0	-5.079e-03	1.0000	41.0	4.56%	63.0	7.45%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e0	-4.519e-03	1.0000	3.0	0.33%	11.2	1.33%
DPL-1(E2F)/cElegans-Adult-ChIP-Seq(modEncode)/Homer	TAGCGCGC	1e0	-4.254e-03	1.0000	4.0	0.44%	14.0	1.65%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-3.396e-03	1.0000	26.0	2.89%	45.2	5.35%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e0	-2.273e-03	1.0000	8.0	0.89%	21.5	2.54%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-1.909e-03	1.0000	13.0	1.45%	29.5	3.49%
SeqBias: CG-repeat	CGCGCGCGCG	1e0	-1.664e-03	1.0000	29.0	3.23%	51.9	6.14%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-1.546e-03	1.0000	19.0	2.11%	38.0	4.50%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e0	-1.419e-03	1.0000	66.0	7.34%	96.8	11.46%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-6.830e-04	1.0000	27.0	3.00%	51.3	6.07%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-5.610e-04	1.0000	43.0	4.78%	72.1	8.54%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e0	-4.200e-04	1.0000	5.0	0.56%	19.4	2.30%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e0	-4.170e-04	1.0000	16.0	1.78%	37.1	4.39%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e0	-3.130e-04	1.0000	57.0	6.34%	91.2	10.80%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e0	-7.900e-05	1.0000	2.0	0.22%	15.7	1.85%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-2.000e-05	1.0000	2.0	0.22%	17.7	2.10%
SEP3(MADS)/Arabidoposis-Flower-Sep3-ChIP-Seq/Homer	CCAAAAAGGG	1e0	-2.000e-05	1.0000	22.0	2.45%	53.8	6.37%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-1.600e-05	1.0000	3.0	0.33%	20.6	2.43%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	-1.200e-05	1.0000	63.0	7.01%	109.4	12.95%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-0.000e+00	1.0000	0.0	0.00%	2.9	0.34%
ABF1/SacCer-Promoters/Homer	CGTRNAAARTGA	1e0	-0.000e+00	1.0000	0.0	0.00%	4.0	0.47%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	-0.000e+00	1.0000	0.0	0.00%	3.7	0.44%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	0.000e+00	1.0000	0.0	0.00%	0.6	0.07%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	0.000e+00	1.0000	0.0	0.00%	0.9	0.10%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	0.000e+00	1.0000	0.0	0.00%	1.0	0.12%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
 Ik-1	NHTTGGGAATRCC	1e0	0.000e+00	1.0000	899.0	100.00%	844.8	100.00%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
DREF/Drosophila-Promoters/Homer	AVYTATCGATAD	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
Unknown3/Drosophila-Promoters/Homer	ACVAKCTGGCAGCGC	1e0	0.000e+00	1.0000	0.0	0.00%	0.9	0.10%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e0	0.000e+00	1.0000	0.0	0.00%	0.6	0.07%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e0	0.000e+00	1.0000	0.0	0.00%	0.7	0.08%
EFL-1(E2F)/cElegans-L1-EFL1-ChIP-Seq(modEncode)/Homer	TGCAARYGCGCTCYA	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
LIN-15B(Zf)/cElegans-L3-LIN15B-ChIP-Seq(modEncode)/Homer	CARTGGAGCGCRYTTGCATT	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e0	0.000e+00	1.0000	0.0	0.00%	0.5	0.05%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%