Information for 9-GTGACCCA (Motif 12)


Reverse Opposite:

p-value:1e-12
log p-value:-2.828e+01
Information Content per bp:1.598
Number of Target Sequences with motif188.0
Percentage of Target Sequences with motif11.54%
Number of Background Sequences with motif79.4
Percentage of Background Sequences with motif4.79%
Average Position of motif in Targets40.5 +/- 20.2bp
Average Position of motif in Background40.2 +/- 18.7bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.10
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Hr46/dmmpmm(Bergman)/fly

Match Rank:1
Score:0.87
Offset:1
Orientation:reverse strand
Alignment:GTGACCCA
-TGACCC-

RTG3/Literature(Harbison)/Yeast

Match Rank:2
Score:0.86
Offset:0
Orientation:reverse strand
Alignment:GTGACCCA
GTGACC--

usp/dmmpmm(Bergman)/fly

Match Rank:3
Score:0.83
Offset:-1
Orientation:reverse strand
Alignment:-GTGACCCA
CGTGACCCC

usp/MA0016.1/Jaspar

Match Rank:4
Score:0.81
Offset:-2
Orientation:reverse strand
Alignment:--GTGACCCA
CCGTGACCCC

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:5
Score:0.81
Offset:1
Orientation:reverse strand
Alignment:GTGACCCA
-TGACCT-

PB0153.1_Nr2f2_2/Jaspar

Match Rank:6
Score:0.81
Offset:-3
Orientation:reverse strand
Alignment:---GTGACCCA-----
NNNNTGACCCGGCGCG

Hr46/dmmpmm(Pollard)/fly

Match Rank:7
Score:0.78
Offset:1
Orientation:reverse strand
Alignment:GTGACCCA---
-TGACCCAATT

PB0057.1_Rxra_1/Jaspar

Match Rank:8
Score:0.77
Offset:-4
Orientation:forward strand
Alignment:----GTGACCCA-----
TGTCGTGACCCCTTAAT

PB0157.1_Rara_2/Jaspar

Match Rank:9
Score:0.76
Offset:-3
Orientation:reverse strand
Alignment:---GTGACCCA-----
NNCNTGACCCCGCTCT

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:10
Score:0.75
Offset:1
Orientation:reverse strand
Alignment:GTGACCCA---
-TGACCTARTT