Information for 10-CCCAGCCTGG (Motif 13)


Reverse Opposite:

p-value:1e-11
log p-value:-2.701e+01
Information Content per bp:1.786
Number of Target Sequences with motif89.0
Percentage of Target Sequences with motif5.46%
Number of Background Sequences with motif20.7
Percentage of Background Sequences with motif1.25%
Average Position of motif in Targets39.7 +/- 18.3bp
Average Position of motif in Background45.2 +/- 27.5bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

SWI5/Literature(Harbison)/Yeast

Match Rank:1
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:CCCAGCCTGG
-CCAGCA---

CRZ1(MacIsaac)/Yeast

Match Rank:2
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:CCCAGCCTGG
--CAGCCAC-

Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer

Match Rank:3
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-CCCAGCCTGG----
TCCCAGMCRAGCCCC

ACE2/MA0267.1/Jaspar

Match Rank:4
Score:0.64
Offset:0
Orientation:forward strand
Alignment:CCCAGCCTGG
ACCAGCA---

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:5
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:CCCAGCCTGG
-BCAGACWA-

YML081W(MacIsaac)/Yeast

Match Rank:6
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:CCCAGCCTGG
TTCAGACTGG

SWI5/MA0402.1/Jaspar

Match Rank:7
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-CCCAGCCTGG
AACCAGCA---

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:8
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--CCCAGCCTGG
TGCCCAGNHW--

PB0206.1_Zic2_2/Jaspar

Match Rank:9
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---CCCAGCCTGG--
CCACACAGCAGGAGA

SWI5(MacIsaac)/Yeast

Match Rank:10
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-CCCAGCCTGG
AACCAGCA---