Information for 12-GWAGAGAAGV (Motif 14)


Reverse Opposite:

p-value:1e-9
log p-value:-2.159e+01
Information Content per bp:1.477
Number of Target Sequences with motif54.0
Percentage of Target Sequences with motif3.31%
Number of Background Sequences with motif8.8
Percentage of Background Sequences with motif0.53%
Average Position of motif in Targets42.8 +/- 19.0bp
Average Position of motif in Background28.3 +/- 14.3bp
Strand Bias (log2 ratio + to - strand density)1.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

POL008.1_DCE_S_I/Jaspar

Match Rank:1
Score:0.72
Offset:4
Orientation:reverse strand
Alignment:GWAGAGAAGV
----NGAAGC

SFL1/MA0377.1/Jaspar

Match Rank:2
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----GWAGAGAAGV-------
TAGAGAATAGAAGAAATAAAA

Trl(Zf)/S2-GAGAfactor-ChIP-Seq(GSE40646)/Homer

Match Rank:3
Score:0.64
Offset:0
Orientation:forward strand
Alignment:GWAGAGAAGV
RGAGAGAG--

Unknown4/Arabidopsis-Promoters/Homer

Match Rank:4
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:GWAGAGAAGV--
--RAAGAMGAMG

GCR2/MA0305.1/Jaspar

Match Rank:5
Score:0.64
Offset:3
Orientation:reverse strand
Alignment:GWAGAGAAGV
---NGGAAGC

GCR2(MacIsaac)/Yeast

Match Rank:6
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:GWAGAGAAGV
---NGGAAGC

Unknown2/Drosophila-Promoters/Homer

Match Rank:7
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:GWAGAGAAGV
-TAGKGATG-

Trl/dmmpmm(Pollard)/fly

Match Rank:8
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-GWAGAGAAGV
GAGAGAGCAA-

Trl/MA0205.1/Jaspar

Match Rank:9
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-GWAGAGAAGV
GAGAGAGCAA-

PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:10
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--GWAGAGAAGV
CGGAAGTGAAAC