Information for 18-CCCCTCCCCW (Motif 20)


Reverse Opposite:

p-value:1e-6
log p-value:-1.433e+01
Information Content per bp:1.782
Number of Target Sequences with motif27.0
Percentage of Target Sequences with motif1.66%
Number of Background Sequences with motif2.7
Percentage of Background Sequences with motif0.16%
Average Position of motif in Targets39.4 +/- 18.7bp
Average Position of motif in Background22.9 +/- 2.4bp
Strand Bias (log2 ratio + to - strand density)-0.8
Multiplicity (# of sites on avg that occur together)1.30
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

SP1/MA0079.3/Jaspar

Match Rank:1
Score:0.88
Offset:-1
Orientation:forward strand
Alignment:-CCCCTCCCCW
GCCCCGCCCCC

ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:2
Score:0.87
Offset:-2
Orientation:reverse strand
Alignment:--CCCCTCCCCW
KGCCCTTCCCCA

KLF5/MA0599.1/Jaspar

Match Rank:3
Score:0.87
Offset:-1
Orientation:forward strand
Alignment:-CCCCTCCCCW
GCCCCGCCCC-

PB0110.1_Bcl6b_2/Jaspar

Match Rank:4
Score:0.85
Offset:-2
Orientation:forward strand
Alignment:--CCCCTCCCCW----
ATCCCCGCCCCTAAAA

PB0202.1_Zfp410_2/Jaspar

Match Rank:5
Score:0.83
Offset:-3
Orientation:forward strand
Alignment:---CCCCTCCCCW----
TCACCCCGCCCCAAATT

Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer

Match Rank:6
Score:0.83
Offset:0
Orientation:reverse strand
Alignment:CCCCTCCCCW
CCCCCCCC--

POL003.1_GC-box/Jaspar

Match Rank:7
Score:0.81
Offset:-3
Orientation:reverse strand
Alignment:---CCCCTCCCCW-
NAGCCCCGCCCCCN

SeqBias: polyC-repeat

Match Rank:8
Score:0.80
Offset:-1
Orientation:forward strand
Alignment:-CCCCTCCCCW
CCCCCCCCCC-

SP2/MA0516.1/Jaspar

Match Rank:9
Score:0.78
Offset:-1
Orientation:forward strand
Alignment:-CCCCTCCCCW----
GCCCCGCCCCCTCCC

PB0039.1_Klf7_1/Jaspar

Match Rank:10
Score:0.78
Offset:-4
Orientation:forward strand
Alignment:----CCCCTCCCCW--
TCGACCCCGCCCCTAT