Information for 3-CTGTCTCN (Motif 4)


Reverse Opposite:

p-value:1e-18
log p-value:-4.355e+01
Information Content per bp:1.495
Number of Target Sequences with motif244.0
Percentage of Target Sequences with motif14.98%
Number of Background Sequences with motif92.3
Percentage of Background Sequences with motif5.57%
Average Position of motif in Targets38.9 +/- 19.6bp
Average Position of motif in Background39.4 +/- 22.3bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MEIS3/MA0775.1/Jaspar

Match Rank:1
Score:0.72
Offset:-1
Orientation:reverse strand
Alignment:-CTGTCTCN
CCTGTCAA-

unc-62/MA0918.1/Jaspar

Match Rank:2
Score:0.72
Offset:-3
Orientation:forward strand
Alignment:---CTGTCTCN-
GAGCTGTCATTT

achi/MA0207.1/Jaspar

Match Rank:3
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:CTGTCTCN
CTGTCA--

Hth/dmmpmm(Noyes_hd)/fly

Match Rank:4
Score:0.71
Offset:-1
Orientation:reverse strand
Alignment:-CTGTCTCN-
NCTGTCANAG

hth/MA0227.1/Jaspar

Match Rank:5
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:CTGTCTCN
CTGTCA--

SPT2/SPT2_YPD/[](Harbison)/Yeast

Match Rank:6
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-CTGTCTCN--
CCTGTCTCTAA

vis/MA0252.1/Jaspar

Match Rank:7
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:CTGTCTCN
CTGTCA--

MEIS2/MA0774.1/Jaspar

Match Rank:8
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-CTGTCTCN
GCTGTCAA-

MEIS1/MA0498.2/Jaspar

Match Rank:9
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:CTGTCTCN
NTGTCAN-

POL009.1_DCE_S_II/Jaspar

Match Rank:10
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-CTGTCTCN
GCTGTG---