Information for 3-TCCCAAGGTA (Motif 5)


Reverse Opposite:

p-value:1e-18
log p-value:-4.165e+01
Information Content per bp:1.663
Number of Target Sequences with motif124.0
Percentage of Target Sequences with motif7.61%
Number of Background Sequences with motif24.5
Percentage of Background Sequences with motif1.48%
Average Position of motif in Targets39.3 +/- 20.0bp
Average Position of motif in Background29.8 +/- 14.8bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

EBF1/MA0154.3/Jaspar

Match Rank:1
Score:0.74
Offset:-2
Orientation:forward strand
Alignment:--TCCCAAGGTA--
ATTCCCAAGGGAAT

EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer

Match Rank:2
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:TCCCAAGGTA--
TCCCNNGGGACN

RIM101/Literature(Harbison)/Yeast

Match Rank:3
Score:0.71
Offset:0
Orientation:forward strand
Alignment:TCCCAAGGTA
TGCCAAG---

RIM101(MacIsaac)/Yeast

Match Rank:4
Score:0.71
Offset:0
Orientation:forward strand
Alignment:TCCCAAGGTA
TGCCAAG---

Ik-1

Match Rank:5
Score:0.66
Offset:-5
Orientation:reverse strand
Alignment:-----TCCCAAGGTA
GGTATTCCCAANN--

ANT(AP2/EREBP)/Arabidopsis thaliana/AthaMap

Match Rank:6
Score:0.66
Offset:-7
Orientation:forward strand
Alignment:-------TCCCAAGGTA
GCACAGTTCCCGAGGT-

NFIA/MA0670.1/Jaspar

Match Rank:7
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--TCCCAAGGTA
GGTGCCAAGT--

RIM101/MA0368.1/Jaspar

Match Rank:8
Score:0.65
Offset:0
Orientation:forward strand
Alignment:TCCCAAGGTA
CGCCAAG---

Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:9
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---TCCCAAGGTA
HTTTCCCASG---

ANT/MA0571.1/Jaspar

Match Rank:10
Score:0.65
Offset:-9
Orientation:forward strand
Alignment:---------TCCCAAGGTA--
GGGCACAGTTCCCGAGGTGAA