Information for 5-YGCGGTGR (Motif 7)


Reverse Opposite:

p-value:1e-17
log p-value:-4.095e+01
Information Content per bp:1.761
Number of Target Sequences with motif238.0
Percentage of Target Sequences with motif14.61%
Number of Background Sequences with motif92.6
Percentage of Background Sequences with motif5.59%
Average Position of motif in Targets38.4 +/- 20.5bp
Average Position of motif in Background39.4 +/- 24.1bp
Strand Bias (log2 ratio + to - strand density)0.8
Multiplicity (# of sites on avg that occur together)1.16
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Run/dmmpmm(Papatsenko)/fly

Match Rank:1
Score:0.88
Offset:0
Orientation:forward strand
Alignment:YGCGGTGR
GGCGGTG-

PB0091.1_Zbtb3_1/Jaspar

Match Rank:2
Score:0.78
Offset:-5
Orientation:reverse strand
Alignment:-----YGCGGTGR----
NNNANTGCAGTGCNNTT

ABI4(1)(AP2/EREBP)/Zea mays/AthaMap

Match Rank:3
Score:0.74
Offset:-3
Orientation:reverse strand
Alignment:---YGCGGTGR
NGGGGCGGTG-

RUNX2/MA0511.2/Jaspar

Match Rank:4
Score:0.70
Offset:-1
Orientation:reverse strand
Alignment:-YGCGGTGR
TTGCGGTTT

SREBF1/MA0595.1/Jaspar

Match Rank:5
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-YGCGGTGR-
GTGGGGTGAT

ALFIN1(HD-PHD)/Medicago sativa/AthaMap

Match Rank:6
Score:0.68
Offset:1
Orientation:forward strand
Alignment:YGCGGTGR---
-GAGGTGGGGC

SREBF2/MA0596.1/Jaspar

Match Rank:7
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-YGCGGTGR-
ATGGGGTGAT

MET28/MA0332.1/Jaspar

Match Rank:8
Score:0.67
Offset:2
Orientation:forward strand
Alignment:YGCGGTGR
--CTGTGG

MET28(MacIsaac)/Yeast

Match Rank:9
Score:0.67
Offset:2
Orientation:forward strand
Alignment:YGCGGTGR
--CTGTGG

ZNF354C/MA0130.1/Jaspar

Match Rank:10
Score:0.67
Offset:4
Orientation:reverse strand
Alignment:YGCGGTGR--
----GTGGAT