Information for 4-AGGAGRATCACT (Motif 9)


Reverse Opposite:

p-value:1e-14
log p-value:-3.269e+01
Information Content per bp:1.684
Number of Target Sequences with motif89.0
Percentage of Target Sequences with motif5.46%
Number of Background Sequences with motif15.0
Percentage of Background Sequences with motif0.91%
Average Position of motif in Targets34.6 +/- 15.3bp
Average Position of motif in Background37.1 +/- 16.3bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

ttk/MA0460.1/Jaspar

Match Rank:1
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-AGGAGRATCACT
AAGGATAAT----

PH0017.1_Cux1_2/Jaspar

Match Rank:2
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--AGGAGRATCACT-
TAATGATGATCACTA

ttk/dmmpmm(Noyes)/fly

Match Rank:3
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--AGGAGRATCACT
CAAGGATAATCNAA

Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer

Match Rank:4
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:AGGAGRATCACT
GGGAGGACNG--

KAN1/MA1027.1/Jaspar

Match Rank:5
Score:0.59
Offset:4
Orientation:reverse strand
Alignment:AGGAGRATCACT
----GAATATNT

dif/Rel/dmmpmm(Bergman)/fly

Match Rank:6
Score:0.58
Offset:1
Orientation:forward strand
Alignment:AGGAGRATCACT
-GGGGAATCCCC

Rel/dmmpmm(Bergman)/fly

Match Rank:7
Score:0.57
Offset:1
Orientation:forward strand
Alignment:AGGAGRATCACT
-GGGGAATCCCN

TEC1/TEC1_YPD/[](Harbison)/Yeast

Match Rank:8
Score:0.56
Offset:2
Orientation:forward strand
Alignment:AGGAGRATCACT
--AGGAATG---

sd/dmmpmm(Bergman)/fly

Match Rank:9
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:AGGAGRATCACT
---AANATGTNT

HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer

Match Rank:10
Score:0.54
Offset:4
Orientation:reverse strand
Alignment:AGGAGRATCACT--
----DGATCRATAN