Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 1629)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 1656)	% of Background Sequences with Motif
PABPC1(?)/MEL-PABC1-CLIP-Seq(GSE69755)/Homer	HAATAAAGNN	1e-7	-1.758e+01	0.0000	268.0	16.45%	165.1	9.97%
PHA-4(Forkhead)/cElegans-Embryos-PHA4-ChIP-Seq(modEncode)/Homer	KTGTTTGC	1e-5	-1.222e+01	0.0010	296.0	18.17%	208.9	12.61%
Pho4(bHLH)/Yeast-Pho4-ChIP-Seq(GSE29506)/Homer	AAGCACGTGBGD	1e-4	-1.115e+01	0.0018	22.0	1.35%	2.2	0.13%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e-4	-1.095e+01	0.0018	42.0	2.58%	13.0	0.78%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e-4	-1.036e+01	0.0025	114.0	7.00%	63.7	3.85%
LHY(Myb)/Seedling-LHY-ChIP-Seq(GSE52175)/Homer	ADAAATATCT	1e-4	-9.449e+00	0.0051	121.0	7.43%	71.0	4.29%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e-4	-9.309e+00	0.0051	35.0	2.15%	10.9	0.66%
E-box/Arabidopsis-Promoters/Homer	GCCACGTG	1e-3	-8.721e+00	0.0079	32.0	1.96%	9.2	0.56%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e-3	-8.405e+00	0.0096	89.0	5.46%	49.4	2.98%
Unknown2/Drosophila-Promoters/Homer	CATCMCTA	1e-3	-7.873e+00	0.0147	91.0	5.59%	52.6	3.18%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e-3	-7.676e+00	0.0163	119.0	7.31%	75.3	4.55%
IBL1(bHLH)/Seedling-IBL1-ChIP-Seq(GSE51120)/Homer	CACGTGCC	1e-3	-7.568e+00	0.0167	100.0	6.14%	60.0	3.62%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-3	-7.555e+00	0.0167	127.0	7.80%	82.8	5.00%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e-3	-7.545e+00	0.0167	36.0	2.21%	13.5	0.82%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e-3	-7.406e+00	0.0167	177.0	10.87%	125.0	7.55%
SPCH(bHLH)/Seedling-SPCH-ChIP-Seq(GSE57497)/Homer	WNBCACGTGA	1e-3	-7.061e+00	0.0207	66.0	4.05%	35.3	2.13%
SeqBias: GA-repeat	GAGAGAGAGA	1e-3	-7.023e+00	0.0207	569.0	34.93%	493.2	29.77%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e-2	-6.590e+00	0.0295	24.0	1.47%	7.6	0.46%
SeqBias: TA-repeat	TATATATATA	1e-2	-6.572e+00	0.0295	459.0	28.18%	390.2	23.55%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-2	-6.534e+00	0.0295	102.0	6.26%	65.8	3.97%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e-2	-6.434e+00	0.0296	104.0	6.38%	67.1	4.05%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e-2	-5.858e+00	0.0502	67.0	4.11%	39.7	2.39%
PIF4(bHLH)/Seedling-PIF4-ChIP-Seq(GSE35315)/Homer	NNBCACGTGN	1e-2	-5.852e+00	0.0502	82.0	5.03%	51.5	3.11%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e-2	-5.835e+00	0.0502	125.0	7.67%	87.4	5.27%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e-2	-5.694e+00	0.0521	60.0	3.68%	34.7	2.10%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e-2	-5.662e+00	0.0521	65.0	3.99%	38.9	2.35%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e-2	-5.620e+00	0.0521	8.0	0.49%	0.0	0.00%
Pho2(bHLH)/Yeast-Pho2-ChIP-Seq(GSE29506)/Homer	CCCACGTGCT	1e-2	-5.554e+00	0.0535	31.0	1.90%	13.5	0.82%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e-2	-5.354e+00	0.0631	29.0	1.78%	12.2	0.74%
GAGA-repeat/SacCer-Promoters/Homer	CTYTCTYTCTCTCTC	1e-2	-5.261e+00	0.0670	330.0	20.26%	277.4	16.74%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-2	-5.227e+00	0.0670	33.0	2.03%	15.3	0.92%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e-2	-5.027e+00	0.0793	122.0	7.49%	88.8	5.36%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e-2	-4.949e+00	0.0832	56.0	3.44%	33.3	2.01%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e-2	-4.916e+00	0.0834	7.0	0.43%	0.0	0.00%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e-2	-4.771e+00	0.0937	75.0	4.60%	50.0	3.02%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e-2	-4.610e+00	0.1070	9.0	0.55%	1.0	0.06%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e-1	-4.536e+00	0.1121	43.0	2.64%	24.0	1.45%
PIF5ox(bHLH)/Arabidopsis-PIF5ox-ChIP-Seq(GSE35062)/Homer	BCACGTGVDN	1e-1	-4.519e+00	0.1121	63.0	3.87%	40.6	2.45%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e-1	-4.273e+00	0.1383	14.0	0.86%	4.4	0.26%
FHY3(FAR1)/Arabidopsis-FHY3-ChIP-Seq(GSE30711)/Homer	HHCACGCGCBTN	1e-1	-4.213e+00	0.1432	6.0	0.37%	0.5	0.03%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e-1	-4.156e+00	0.1479	20.0	1.23%	8.4	0.51%
Unknown6/Drosophila-Promoters/Homer	AATTTTAAAA	1e-1	-4.136e+00	0.1479	100.0	6.14%	73.6	4.44%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e-1	-4.086e+00	0.1513	94.0	5.77%	68.6	4.14%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e-1	-4.002e+00	0.1608	8.0	0.49%	1.8	0.11%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e-1	-3.656e+00	0.2222	123.0	7.55%	96.0	5.80%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e-1	-3.488e+00	0.2571	9.0	0.55%	2.7	0.17%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e-1	-3.341e+00	0.2854	12.0	0.74%	4.3	0.26%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e-1	-3.341e+00	0.2854	12.0	0.74%	4.8	0.29%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e-1	-3.340e+00	0.2854	22.0	1.35%	11.9	0.72%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e-1	-3.334e+00	0.2854	15.0	0.92%	6.1	0.37%
Unknown4/Arabidopsis-Promoters/Homer	CKTCKTCTTY	1e-1	-3.328e+00	0.2854	67.0	4.11%	48.1	2.90%
Oct6(POU,Homeobox)/NPC-Oct6-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e-1	-3.327e+00	0.2854	41.0	2.52%	27.0	1.63%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e-1	-3.244e+00	0.2854	37.0	2.27%	23.5	1.42%
Cbf1(bHLH)/Yeast-Cbf1-ChIP-Seq(GSE29506)/Homer	TCACGTGAYH	1e-1	-3.242e+00	0.2854	19.0	1.17%	10.0	0.60%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e-1	-3.231e+00	0.2854	243.0	14.92%	212.0	12.79%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-1	-3.190e+00	0.2854	50.0	3.07%	34.7	2.10%
ELT-3(Gata)/cElegans-L1-ELT3-ChIP-Seq(modEncode)/Homer	AWTGATAAGA	1e-1	-3.090e+00	0.3089	46.0	2.82%	31.7	1.91%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e-1	-3.010e+00	0.3288	21.0	1.29%	12.0	0.72%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-1	-2.938e+00	0.3476	14.0	0.86%	6.3	0.38%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e-1	-2.898e+00	0.3557	11.0	0.68%	4.5	0.27%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e-1	-2.819e+00	0.3723	6.0	0.37%	2.0	0.12%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e-1	-2.819e+00	0.3723	6.0	0.37%	1.1	0.07%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e-1	-2.816e+00	0.3723	195.0	11.97%	169.6	10.24%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e-1	-2.807e+00	0.3723	4.0	0.25%	0.8	0.05%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e-1	-2.807e+00	0.3723	4.0	0.25%	0.0	0.00%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e-1	-2.694e+00	0.3964	20.0	1.23%	11.7	0.70%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e-1	-2.675e+00	0.3978	51.0	3.13%	37.5	2.26%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e-1	-2.663e+00	0.3978	37.0	2.27%	25.9	1.56%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e-1	-2.663e+00	0.3978	37.0	2.27%	25.1	1.51%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e-1	-2.547e+00	0.4328	56.0	3.44%	42.7	2.58%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e-1	-2.523e+00	0.4371	77.0	4.73%	61.7	3.72%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e-1	-2.493e+00	0.4442	79.0	4.85%	63.6	3.84%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e-1	-2.471e+00	0.4481	23.0	1.41%	14.7	0.89%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e-1	-2.459e+00	0.4481	51.0	3.13%	38.8	2.34%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e-1	-2.397e+00	0.4693	45.0	2.76%	33.5	2.02%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e-1	-2.356e+00	0.4829	232.0	14.24%	209.7	12.66%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-1	-2.346e+00	0.4829	47.0	2.89%	35.1	2.12%
Unknown4/Drosophila-Promoters/Homer	AAAAATACCRMA	1e-1	-2.331e+00	0.4829	15.0	0.92%	8.3	0.50%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-1	-2.319e+00	0.4829	80.0	4.91%	65.1	3.93%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e0	-2.300e+00	0.4849	95.0	5.83%	80.0	4.83%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)	NNAYTTCCTGHN	1e0	-2.257e+00	0.5002	51.0	3.13%	39.3	2.37%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e0	-2.226e+00	0.5094	35.0	2.15%	25.1	1.52%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-2.163e+00	0.5362	46.0	2.82%	35.5	2.14%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e0	-2.152e+00	0.5362	23.0	1.41%	15.3	0.92%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-2.151e+00	0.5362	113.0	6.94%	97.3	5.87%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	-2.105e+00	0.5419	3.0	0.18%	0.0	0.00%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-2.105e+00	0.5419	3.0	0.18%	0.0	0.00%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e0	-2.091e+00	0.5435	40.0	2.46%	30.3	1.83%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e0	-2.085e+00	0.5435	50.0	3.07%	39.9	2.41%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e0	-2.064e+00	0.5435	25.0	1.53%	17.6	1.06%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e0	-2.064e+00	0.5435	25.0	1.53%	17.5	1.06%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-2.045e+00	0.5442	19.0	1.17%	12.8	0.78%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-2.012e+00	0.5565	14.0	0.86%	8.8	0.53%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e0	-2.000e+00	0.5570	118.0	7.24%	103.5	6.24%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e0	-1.974e+00	0.5659	6.0	0.37%	2.2	0.14%
EGL-5(Homeobox)/cElegans-L3-EGL5-ChIP-Seq(modEncode)/Homer	ATTTAATGGG	1e0	-1.890e+00	0.6093	142.0	8.72%	127.2	7.68%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-1.882e+00	0.6093	16.0	0.98%	10.3	0.62%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e0	-1.882e+00	0.6093	16.0	0.98%	10.7	0.65%
Zelda(Zf)/Embryo-zld-ChIP-Seq(GSE65441)/Homer	KBCTACCTGW	1e0	-1.835e+00	0.6241	24.0	1.47%	17.9	1.08%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-1.830e+00	0.6241	17.0	1.04%	11.6	0.70%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e0	-1.805e+00	0.6302	34.0	2.09%	26.2	1.58%
AARE(HLH)/mES-cMyc-ChIP-Seq/Homer	GATTGCATCA	1e0	-1.803e+00	0.6302	7.0	0.43%	3.5	0.21%
SeqBias: CG-repeat	CGCGCGCGCG	1e0	-1.785e+00	0.6306	35.0	2.15%	27.2	1.64%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e0	-1.774e+00	0.6312	12.0	0.74%	7.1	0.43%
CES-1(Homeobox)/cElegans-L1-CES1-ChIP-Seq(modEncode)/Homer	AAATTSAATTTN	1e0	-1.761e+00	0.6333	48.0	2.95%	39.9	2.41%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e0	-1.743e+00	0.6389	19.0	1.17%	13.7	0.83%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-1.682e+00	0.6731	55.0	3.38%	46.8	2.83%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-1.676e+00	0.6731	118.0	7.24%	106.2	6.41%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e0	-1.628e+00	0.6972	61.0	3.74%	52.6	3.18%
SeqBias: C/A-bias	MMMMMMMMMM	1e0	-1.612e+00	0.7019	1564.0	96.01%	1579.5	95.34%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-1.597e+00	0.7019	9.0	0.55%	5.6	0.34%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	-1.597e+00	0.7019	9.0	0.55%	5.5	0.33%
GAGA-repeat/Arabidopsis-Promoters/Homer	CTCTCTCTCY	1e0	-1.571e+00	0.7120	69.0	4.24%	61.0	3.68%
PQM-1(?)/cElegans-L3-ChIP-Seq(modEncode)/Homer	ACTGATAAGA	1e0	-1.570e+00	0.7120	25.0	1.53%	19.8	1.20%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e0	-1.563e+00	0.7120	37.0	2.27%	30.7	1.85%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-1.538e+00	0.7167	17.0	1.04%	12.8	0.77%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	-1.531e+00	0.7167	76.0	4.67%	67.4	4.07%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-1.529e+00	0.7167	10.0	0.61%	6.2	0.38%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-1.529e+00	0.7167	10.0	0.61%	6.3	0.38%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e0	-1.516e+00	0.7167	5.0	0.31%	2.4	0.14%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-1.516e+00	0.7167	5.0	0.31%	2.1	0.13%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e0	-1.513e+00	0.7167	58.0	3.56%	50.2	3.03%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e0	-1.506e+00	0.7167	59.0	3.62%	51.0	3.08%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e0	-1.504e+00	0.7167	42.0	2.58%	35.6	2.15%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e0	-1.480e+00	0.7167	30.0	1.84%	24.3	1.47%
Unknown5/Drosophila-Promoters/Homer	GCTGATAASV	1e0	-1.439e+00	0.7285	33.0	2.03%	27.1	1.64%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-1.430e+00	0.7293	12.0	0.74%	8.7	0.53%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-1.403e+00	0.7375	2.0	0.12%	0.0	0.00%
GEI-11(Myb?)/cElegans-L4-GEI11-ChIP-Seq(modEncode)/Homer	CCGACAYYTYACGGG	1e0	-1.403e+00	0.7375	2.0	0.12%	0.0	0.00%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-1.395e+00	0.7381	37.0	2.27%	31.3	1.89%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e0	-1.367e+00	0.7530	40.0	2.46%	34.3	2.07%
SeqBias: CA-repeat	CACACACACA	1e0	-1.328e+00	0.7767	344.0	21.12%	334.8	20.21%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e0	-1.300e+00	0.7931	30.0	1.84%	25.2	1.52%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e0	-1.280e+00	0.8028	32.0	1.96%	27.6	1.67%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	-1.273e+00	0.8028	8.0	0.49%	5.1	0.31%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e0	-1.255e+00	0.8112	35.0	2.15%	30.4	1.83%
SeqBias: CG bias	SSSSSSSSSS	1e0	-1.199e+00	0.8516	644.0	39.53%	640.0	38.63%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e0	-1.197e+00	0.8516	10.0	0.61%	7.0	0.42%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e0	-1.173e+00	0.8613	50.0	3.07%	45.7	2.76%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-1.170e+00	0.8613	11.0	0.68%	8.8	0.53%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e0	-1.159e+00	0.8613	54.0	3.31%	49.7	3.00%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-1.152e+00	0.8613	28.0	1.72%	24.6	1.48%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-1.125e+00	0.8784	32.0	1.96%	29.0	1.75%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-1.091e+00	0.8966	4.0	0.25%	2.2	0.14%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	-1.091e+00	0.8966	4.0	0.25%	2.2	0.13%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e0	-1.088e+00	0.8966	92.0	5.65%	87.5	5.28%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-1.084e+00	0.8966	41.0	2.52%	37.8	2.28%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e0	-1.080e+00	0.8966	42.0	2.58%	38.7	2.33%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e0	-1.071e+00	0.8966	45.0	2.76%	41.7	2.52%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e0	-1.057e+00	0.8966	50.0	3.07%	46.9	2.83%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e0	-1.045e+00	0.9015	20.0	1.23%	17.1	1.03%
caudal(Homeobox)/Drosophila-Embryos-ChIP-Chip(modEncode)/Homer	GGYCATAAAW	1e0	-1.020e+00	0.9184	74.0	4.54%	70.2	4.23%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-9.784e-01	0.9446	7.0	0.43%	5.7	0.34%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-9.784e-01	0.9446	7.0	0.43%	5.9	0.35%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-9.450e-01	0.9705	9.0	0.55%	7.3	0.44%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e0	-9.444e-01	0.9705	56.0	3.44%	53.2	3.21%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-9.331e-01	0.9705	10.0	0.61%	9.0	0.54%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e0	-9.323e-01	0.9705	78.0	4.79%	75.2	4.54%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e0	-9.314e-01	0.9705	81.0	4.97%	78.3	4.73%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e0	-9.234e-01	0.9705	11.0	0.68%	9.9	0.60%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e0	-9.152e-01	0.9705	12.0	0.74%	10.1	0.61%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-8.818e-01	0.9891	19.0	1.17%	17.6	1.06%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e0	-8.720e-01	0.9927	23.0	1.41%	21.1	1.27%
LIN-39(Homeobox)/cElegans.L3-LIN39-ChIP-Seq(modEncode)/Homer	ATGATTRATG	1e0	-8.587e-01	0.9998	99.0	6.08%	97.5	5.89%
TATA-box/SacCer-Promoters/Homer	BBHWTATATA	1e0	-8.517e-01	1.0000	60.0	3.68%	58.8	3.55%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	-7.748e-01	1.0000	69.0	4.24%	68.8	4.15%
RLR1?/SacCer-Promoters/Homer	WTTTTCYYTTTT	1e0	-7.661e-01	1.0000	56.0	3.44%	55.1	3.32%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e0	-7.640e-01	1.0000	53.0	3.25%	52.1	3.14%
SOC1(MADS)/Seedling-SOC1-ChIP-Seq(GSE45846)/Homer	TWCCAWWTWTGG	1e0	-7.355e-01	1.0000	20.0	1.23%	19.3	1.17%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-7.256e-01	1.0000	12.0	0.74%	11.4	0.69%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e0	-7.239e-01	1.0000	91.0	5.59%	91.3	5.51%
Unknown1/Arabidopsis-Promoters/Homer	RGGGTAWWWTHGTAA	1e0	-7.226e-01	1.0000	10.0	0.61%	9.5	0.57%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-7.210e-01	1.0000	9.0	0.55%	8.0	0.48%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e0	-7.194e-01	1.0000	8.0	0.49%	7.3	0.44%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-7.176e-01	1.0000	7.0	0.43%	6.2	0.37%
TATA-box/Drosophila-Promoters/Homer	CTATAAAAGCSV	1e0	-7.136e-01	1.0000	5.0	0.31%	4.3	0.26%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-7.136e-01	1.0000	5.0	0.31%	4.7	0.29%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e0	-7.136e-01	1.0000	5.0	0.31%	4.6	0.28%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e0	-7.136e-01	1.0000	5.0	0.31%	5.0	0.30%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e0	-7.113e-01	1.0000	4.0	0.25%	4.0	0.24%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e0	-7.056e-01	1.0000	2.0	0.12%	1.9	0.12%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	-7.056e-01	1.0000	2.0	0.12%	1.5	0.09%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-7.054e-01	1.0000	385.0	23.63%	390.8	23.59%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-7.014e-01	1.0000	1.0	0.06%	0.0	0.00%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e0	-7.014e-01	1.0000	1.0	0.06%	0.6	0.03%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	-7.014e-01	1.0000	1.0	0.06%	0.0	0.00%
Unknown2/Arabidopsis-Promoters/Homer	AAACGACGTCGTTTT	1e0	-7.014e-01	1.0000	1.0	0.06%	0.0	0.00%
EFL-1(E2F)/cElegans-L1-EFL1-ChIP-Seq(modEncode)/Homer	TGCAARYGCGCTCYA	1e0	-7.014e-01	1.0000	1.0	0.06%	0.7	0.04%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e0	-6.805e-01	1.0000	51.0	3.13%	51.4	3.10%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-6.397e-01	1.0000	29.0	1.78%	29.5	1.78%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-6.343e-01	1.0000	68.0	4.17%	69.6	4.20%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e0	-6.288e-01	1.0000	25.0	1.53%	25.0	1.51%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-6.288e-01	1.0000	25.0	1.53%	25.1	1.51%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e0	-6.288e-01	1.0000	25.0	1.53%	25.4	1.53%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-6.280e-01	1.0000	108.0	6.63%	110.3	6.66%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-6.120e-01	1.0000	20.0	1.23%	20.3	1.23%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-6.081e-01	1.0000	19.0	1.17%	19.3	1.17%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-6.074e-01	1.0000	52.0	3.19%	53.6	3.24%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-5.994e-01	1.0000	17.0	1.04%	17.7	1.07%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-5.994e-01	1.0000	17.0	1.04%	17.4	1.05%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e0	-5.993e-01	1.0000	48.0	2.95%	49.7	3.00%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e0	-5.895e-01	1.0000	15.0	0.92%	15.2	0.91%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e0	-5.807e-01	1.0000	40.0	2.46%	42.0	2.53%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e0	-5.778e-01	1.0000	13.0	0.80%	13.1	0.79%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e0	-5.609e-01	1.0000	62.0	3.81%	64.8	3.91%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-5.471e-01	1.0000	29.0	1.78%	30.8	1.86%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-5.394e-01	1.0000	27.0	1.66%	28.7	1.73%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e0	-5.394e-01	1.0000	27.0	1.66%	28.3	1.71%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-5.354e-01	1.0000	8.0	0.49%	8.4	0.51%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e0	-5.267e-01	1.0000	105.0	6.45%	109.6	6.62%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e0	-5.228e-01	1.0000	7.0	0.43%	7.6	0.46%
REB1/SacCer-Promoters/Homer	KCCGGGTAAYRR	1e0	-5.228e-01	1.0000	7.0	0.43%	7.9	0.48%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-5.228e-01	1.0000	7.0	0.43%	7.4	0.45%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-5.219e-01	1.0000	23.0	1.41%	24.7	1.49%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e0	-5.078e-01	1.0000	6.0	0.37%	6.4	0.39%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-5.078e-01	1.0000	6.0	0.37%	6.1	0.37%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e0	-5.063e-01	1.0000	20.0	1.23%	21.4	1.29%
E-box/Drosophila-Promoters/Homer	AACAGCTGTTHN	1e0	-4.893e-01	1.0000	5.0	0.31%	5.3	0.32%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-4.893e-01	1.0000	5.0	0.31%	5.2	0.32%
KANADI1(Myb)/Seedling-KAN1-ChIP-Seq(GSE48081)/Homer	ARGAATAWWN	1e0	-4.824e-01	1.0000	105.0	6.45%	110.5	6.67%
SeqBias: G/A bias	RRRRRRRRRR	1e0	-4.815e-01	1.0000	1588.0	97.48%	1616.8	97.58%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e0	-4.806e-01	1.0000	16.0	0.98%	17.2	1.04%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e0	-4.806e-01	1.0000	16.0	0.98%	17.4	1.05%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e0	-4.748e-01	1.0000	51.0	3.13%	54.2	3.27%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e0	-4.743e-01	1.0000	31.0	1.90%	33.5	2.02%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-4.655e-01	1.0000	4.0	0.25%	4.0	0.24%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e0	-4.655e-01	1.0000	4.0	0.25%	4.5	0.27%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-4.655e-01	1.0000	4.0	0.25%	4.1	0.24%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e0	-4.605e-01	1.0000	118.0	7.24%	124.2	7.50%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e0	-4.513e-01	1.0000	26.0	1.60%	28.7	1.74%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e0	-4.504e-01	1.0000	63.0	3.87%	67.9	4.10%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e0	-4.329e-01	1.0000	100.0	6.14%	106.4	6.42%
ABF1/SacCer-Promoters/Homer	CGTRNAAARTGA	1e0	-4.329e-01	1.0000	3.0	0.18%	3.8	0.23%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e0	-4.329e-01	1.0000	3.0	0.18%	3.9	0.23%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-4.271e-01	1.0000	54.0	3.31%	58.5	3.53%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e0	-4.018e-01	1.0000	18.0	1.10%	20.9	1.26%
TOD6?/SacCer-Promoters/Homer	GCGATGAGMT	1e0	-3.951e-01	1.0000	8.0	0.49%	9.2	0.55%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-3.836e-01	1.0000	2.0	0.12%	2.5	0.15%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-3.836e-01	1.0000	2.0	0.12%	2.4	0.15%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e0	-3.836e-01	1.0000	2.0	0.12%	2.6	0.16%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-3.836e-01	1.0000	2.0	0.12%	2.0	0.12%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e0	-3.778e-01	1.0000	7.0	0.43%	8.4	0.51%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e0	-3.778e-01	1.0000	7.0	0.43%	8.7	0.53%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-3.778e-01	1.0000	7.0	0.43%	8.2	0.50%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-3.778e-01	1.0000	7.0	0.43%	8.6	0.52%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-3.727e-01	1.0000	25.0	1.53%	28.3	1.71%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e0	-3.671e-01	1.0000	14.0	0.86%	16.1	0.97%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e0	-3.539e-01	1.0000	22.0	1.35%	25.5	1.54%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e0	-3.539e-01	1.0000	22.0	1.35%	25.8	1.56%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e0	-3.333e-01	1.0000	5.0	0.31%	6.6	0.40%
Unknown3/Arabidopsis-Promoters/Homer	AYTAAACCGG	1e0	-3.333e-01	1.0000	5.0	0.31%	6.8	0.41%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	-3.304e-01	1.0000	190.0	11.66%	203.4	12.28%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-3.053e-01	1.0000	9.0	0.55%	11.9	0.72%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-2.951e-01	1.0000	101.0	6.20%	111.7	6.74%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-2.931e-01	1.0000	1.0	0.06%	2.0	0.12%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e0	-2.931e-01	1.0000	1.0	0.06%	1.4	0.09%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-2.888e-01	1.0000	8.0	0.49%	10.9	0.65%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-2.427e-01	1.0000	16.0	0.98%	20.2	1.22%
SeqBias: polyC-repeat	CCCCCCCCCC	1e0	-2.372e-01	1.0000	1293.0	79.37%	1332.9	80.45%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e0	-2.320e-01	1.0000	29.0	1.78%	35.3	2.13%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e0	-2.271e-01	1.0000	46.0	2.82%	54.7	3.30%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e0	-2.249e-01	1.0000	9.0	0.55%	12.9	0.78%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e0	-2.235e-01	1.0000	14.0	0.86%	18.2	1.10%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e0	-2.138e-01	1.0000	2.0	0.12%	3.6	0.22%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-2.138e-01	1.0000	2.0	0.12%	3.4	0.21%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e0	-2.138e-01	1.0000	2.0	0.12%	3.1	0.19%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-2.138e-01	1.0000	2.0	0.12%	3.4	0.21%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-2.138e-01	1.0000	2.0	0.12%	4.0	0.24%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-2.138e-01	1.0000	2.0	0.12%	4.0	0.24%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-2.019e-01	1.0000	12.0	0.74%	16.3	0.98%
SeqBias: A/T bias	WWWWWWWWWW	1e0	-1.985e-01	1.0000	1180.0	72.44%	1222.7	73.80%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-1.964e-01	1.0000	4.0	0.25%	6.4	0.39%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	-1.949e-01	1.0000	46.0	2.82%	55.2	3.33%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e0	-1.873e-01	1.0000	245.0	15.04%	268.0	16.18%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-1.829e-01	1.0000	61.0	3.74%	72.3	4.37%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	-1.818e-01	1.0000	27.0	1.66%	35.0	2.11%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-1.814e-01	1.0000	15.0	0.92%	20.1	1.22%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e0	-1.798e-01	1.0000	81.0	4.97%	94.2	5.69%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-1.776e-01	1.0000	20.0	1.23%	26.0	1.57%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e0	-1.775e-01	1.0000	10.0	0.61%	14.9	0.90%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-1.719e-01	1.0000	6.0	0.37%	9.5	0.57%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-1.634e-01	1.0000	107.0	6.57%	123.8	7.47%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-1.633e-01	1.0000	18.0	1.10%	24.1	1.46%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-1.624e-01	1.0000	13.0	0.80%	18.7	1.13%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e0	-1.567e-01	1.0000	322.0	19.77%	352.0	21.25%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e0	-1.567e-01	1.0000	43.0	2.64%	53.4	3.23%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-1.547e-01	1.0000	154.0	9.45%	174.7	10.54%
Tal1	CATCTG	1e0	-1.532e-01	1.0000	68.0	4.17%	81.1	4.89%
RBFox2(?)/Heart-RBFox2-CLIP-Seq(GSE57926)/Homer	TGCATGCA	1e0	-1.521e-01	1.0000	124.0	7.61%	142.9	8.63%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-1.508e-01	1.0000	34.0	2.09%	43.8	2.64%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-1.508e-01	1.0000	34.0	2.09%	43.9	2.65%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e0	-1.496e-01	1.0000	8.0	0.49%	12.9	0.78%
Initiator/Drosophila-Promoters/Homer	NTCAGTYG	1e0	-1.446e-01	1.0000	118.0	7.24%	136.5	8.24%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e0	-1.391e-01	1.0000	91.0	5.59%	107.5	6.49%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-1.370e-01	1.0000	1.0	0.06%	2.4	0.15%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	-1.370e-01	1.0000	1.0	0.06%	2.1	0.13%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-1.308e-01	1.0000	76.0	4.67%	91.8	5.54%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	-1.293e-01	1.0000	130.0	7.98%	150.8	9.10%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-1.279e-01	1.0000	23.0	1.41%	31.5	1.90%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e0	-1.211e-01	1.0000	54.0	3.31%	67.2	4.05%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e0	-1.203e-01	1.0000	134.0	8.23%	155.6	9.39%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-1.200e-01	1.0000	2.0	0.12%	4.7	0.29%
PCF/Arabidopsis-Promoters/Homer	NNWWWTGGGCYTDDN	1e0	-1.183e-01	1.0000	9.0	0.55%	14.4	0.87%
Unknown1(NR/Ini-like)/Drosophila-Promoters/Homer	MYGGTCACACTG	1e0	-1.173e-01	1.0000	6.0	0.37%	10.8	0.65%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e0	-1.068e-01	1.0000	15.0	0.92%	22.5	1.36%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e0	-1.026e-01	1.0000	40.0	2.46%	52.1	3.15%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	-9.954e-02	1.0000	33.0	2.03%	44.0	2.66%
SFP1/SacCer-Promoters/Homer	DDAAAAATTTTY	1e0	-9.920e-02	1.0000	5.0	0.31%	9.4	0.56%
SUT1?/SacCer-Promoters/Homer	CCCCGCGC	1e0	-9.509e-02	1.0000	371.0	22.77%	410.0	24.75%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e0	-9.274e-02	1.0000	7.0	0.43%	12.6	0.76%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e0	-9.058e-02	1.0000	42.0	2.58%	55.7	3.36%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e0	-8.442e-02	1.0000	9.0	0.55%	15.6	0.94%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e0	-8.174e-02	1.0000	28.0	1.72%	39.4	2.38%
HLH-1(bHLH)/cElegans-Embryo-HLH1-ChIP-Seq(modEncode)/Homer	RACAGCTGTTBH	1e0	-8.051e-02	1.0000	23.0	1.41%	33.8	2.04%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e0	-7.816e-02	1.0000	32.0	1.96%	44.6	2.69%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-7.085e-02	1.0000	46.0	2.82%	61.5	3.71%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e0	-6.664e-02	1.0000	1.0	0.06%	3.0	0.18%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-6.471e-02	1.0000	5.0	0.31%	10.4	0.63%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-6.344e-02	1.0000	7.0	0.43%	13.4	0.81%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-5.907e-02	1.0000	3.0	0.18%	7.7	0.46%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e0	-5.907e-02	1.0000	3.0	0.18%	7.9	0.48%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e0	-5.414e-02	1.0000	68.0	4.17%	88.1	5.32%
SEP3(MADS)/Arabidoposis-Flower-Sep3-ChIP-Seq/Homer	CCAAAAAGGG	1e0	-4.523e-02	1.0000	55.0	3.38%	74.9	4.52%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e0	-4.493e-02	1.0000	34.0	2.09%	49.3	2.97%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e0	-4.286e-02	1.0000	222.0	13.63%	261.0	15.75%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-3.939e-02	1.0000	112.0	6.88%	140.1	8.46%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e0	-3.625e-02	1.0000	13.0	0.80%	23.9	1.44%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-3.300e-02	1.0000	1.0	0.06%	4.1	0.25%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-3.119e-02	1.0000	40.0	2.46%	58.5	3.53%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-2.768e-02	1.0000	11.0	0.68%	21.4	1.29%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e0	-2.398e-02	1.0000	31.0	1.90%	48.8	2.94%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-2.371e-02	1.0000	8.0	0.49%	17.8	1.07%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-2.068e-02	1.0000	3.0	0.18%	9.5	0.57%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-1.894e-02	1.0000	7.0	0.43%	16.4	0.99%
SeqBias: polyA-repeat	AAAAAAAAAA	1e0	-1.831e-02	1.0000	1476.0	90.61%	1533.2	92.54%
Dorsal(RHD)/Embryo-dl-ChIP-Seq(GSE65441)/Homer	GGGAAAAMCCCG	1e0	-1.674e-02	1.0000	5.0	0.31%	13.2	0.79%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e0	-1.647e-02	1.0000	1.0	0.06%	5.9	0.36%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	-1.613e-02	1.0000	118.0	7.24%	153.7	9.28%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-1.177e-02	1.0000	60.0	3.68%	87.4	5.28%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-1.145e-02	1.0000	2.0	0.12%	8.2	0.50%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e0	-1.113e-02	1.0000	12.0	0.74%	25.0	1.51%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e0	-9.397e-03	1.0000	39.0	2.39%	62.9	3.80%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e0	-8.983e-03	1.0000	15.0	0.92%	30.0	1.81%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e0	-8.744e-03	1.0000	28.0	1.72%	48.7	2.94%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e0	-8.299e-03	1.0000	66.0	4.05%	96.8	5.84%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-6.514e-03	1.0000	25.0	1.53%	45.4	2.74%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e0	-6.514e-03	1.0000	25.0	1.53%	45.1	2.72%
SeqBias: GCW-triplet	GCWGCWGCWGCW	1e0	-5.911e-03	1.0000	1519.0	93.25%	1577.2	95.20%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e0	-5.876e-03	1.0000	19.0	1.17%	37.7	2.28%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e0	-5.338e-03	1.0000	14.0	0.86%	30.5	1.84%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e0	-4.641e-03	1.0000	76.0	4.67%	111.5	6.73%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-4.599e-03	1.0000	119.0	7.31%	162.3	9.80%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-4.368e-03	1.0000	70.0	4.30%	104.1	6.29%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-4.095e-03	1.0000	4.0	0.25%	14.3	0.86%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-3.445e-03	1.0000	57.0	3.50%	89.1	5.38%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-2.915e-03	1.0000	47.0	2.89%	77.1	4.65%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e0	-2.817e-03	1.0000	158.0	9.70%	210.6	12.71%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-5.720e-04	1.0000	28.0	1.72%	57.7	3.48%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e0	-2.940e-04	1.0000	98.0	6.02%	151.4	9.14%
Trl(Zf)/S2-GAGAfactor-ChIP-Seq(GSE40646)/Homer	RGAGAGAG	1e0	-1.180e-04	1.0000	106.0	6.51%	165.7	10.00%
DPL-1(E2F)/cElegans-Adult-ChIP-Seq(modEncode)/Homer	TAGCGCGC	1e0	-1.000e-04	1.0000	5.0	0.31%	23.8	1.44%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-8.600e-05	1.0000	53.0	3.25%	98.7	5.96%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e0	-5.900e-05	1.0000	132.0	8.10%	200.3	12.09%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-8.000e-06	1.0000	142.0	8.72%	221.3	13.36%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e0	-2.000e-06	1.0000	15.0	0.92%	50.4	3.04%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-0.000e+00	1.0000	98.0	6.02%	180.5	10.89%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e0	-0.000e+00	1.0000	0.0	0.00%	2.3	0.14%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e0	-0.000e+00	1.0000	0.0	0.00%	3.6	0.22%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
 Ik-1	NHTTGGGAATRCC	1e0	0.000e+00	1.0000	1629.0	100.00%	1656.8	100.00%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	0.000e+00	1.0000	0.0	0.00%	0.5	0.03%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
LIN-15B(Zf)/cElegans-L3-LIN15B-ChIP-Seq(modEncode)/Homer	CARTGGAGCGCRYTTGCATT	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e0	0.000e+00	1.0000	0.0	0.00%	1.5	0.09%
Unknown3/Drosophila-Promoters/Homer	ACVAKCTGGCAGCGC	1e0	0.000e+00	1.0000	0.0	0.00%	1.7	0.10%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	0.000e+00	1.0000	0.0	0.00%	1.9	0.11%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e0	0.000e+00	1.0000	0.0	0.00%	1.5	0.09%
DREF/Drosophila-Promoters/Homer	AVYTATCGATAD	1e0	0.000e+00	1.0000	0.0	0.00%	1.2	0.07%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e0	0.000e+00	1.0000	0.0	0.00%	1.1	0.06%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e0	0.000e+00	1.0000	0.0	0.00%	1.2	0.07%