Information for 5-TGCCTCCTGA (Motif 10)


Reverse Opposite:

p-value:1e-5
log p-value:-1.356e+01
Information Content per bp:1.659
Number of Target Sequences with motif92.0
Percentage of Target Sequences with motif6.30%
Number of Background Sequences with motif42.8
Percentage of Background Sequences with motif2.77%
Average Position of motif in Targets35.8 +/- 19.7bp
Average Position of motif in Background36.3 +/- 19.3bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.09
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

USV1/MA0413.1/Jaspar

Match Rank:1
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---TGCCTCCTGA-------
AAATTCCCCCTGAATTTGTG

E(spl)/dmmpmm(Papatsenko)/fly

Match Rank:2
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--TGCCTCCTGA
CGTGCCNNGTG-

RAV1(2)(AP2/EREBP)/Arabidopsis thaliana/AthaMap

Match Rank:3
Score:0.65
Offset:1
Orientation:forward strand
Alignment:TGCCTCCTGA---
-ATCACCTGAGGC

RAV1(var.2)/MA0583.1/Jaspar

Match Rank:4
Score:0.65
Offset:1
Orientation:forward strand
Alignment:TGCCTCCTGA---
-ATCACCTGAGGC

SOK2(MacIsaac)/Yeast

Match Rank:5
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-TGCCTCCTGA
TTGCCTGC---

REI1/MA0364.1/Jaspar

Match Rank:6
Score:0.65
Offset:3
Orientation:forward strand
Alignment:TGCCTCCTGA
---CCCCTGA

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:7
Score:0.64
Offset:2
Orientation:forward strand
Alignment:TGCCTCCTGA--
--CCTGCTGAGH

ZmHOX2a(1)(HD-HOX)/Zea mays/AthaMap

Match Rank:8
Score:0.64
Offset:3
Orientation:forward strand
Alignment:TGCCTCCTGA
---GTCCTAA

PHD1(MacIsaac)/Yeast

Match Rank:9
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-TGCCTCCTGA
GTGCCT-----

ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer

Match Rank:10
Score:0.64
Offset:-4
Orientation:reverse strand
Alignment:----TGCCTCCTGA
CAGCTGTTTCCT--