Information for 6-GGAGGTGGAG (Motif 11)


Reverse Opposite:

p-value:1e-5
log p-value:-1.281e+01
Information Content per bp:1.538
Number of Target Sequences with motif70.0
Percentage of Target Sequences with motif4.79%
Number of Background Sequences with motif28.6
Percentage of Background Sequences with motif1.85%
Average Position of motif in Targets33.8 +/- 18.8bp
Average Position of motif in Background42.0 +/- 22.9bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

ALFIN1(HD-PHD)/Medicago sativa/AthaMap

Match Rank:1
Score:0.73
Offset:1
Orientation:forward strand
Alignment:GGAGGTGGAG-
-GAGGTGGGGC

SP1/MA0079.3/Jaspar

Match Rank:2
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:GGAGGTGGAG-
GGGGGCGGGGC

ZNF354C/MA0130.1/Jaspar

Match Rank:3
Score:0.69
Offset:4
Orientation:reverse strand
Alignment:GGAGGTGGAG
----GTGGAT

ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer

Match Rank:4
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---GGAGGTGGAG
ACAGGATGTGGT-

EGR1/MA0162.2/Jaspar

Match Rank:5
Score:0.67
Offset:-3
Orientation:reverse strand
Alignment:---GGAGGTGGAG-
GGCGGGGGCGGGGG

MZF1(var.2)/MA0057.1/Jaspar

Match Rank:6
Score:0.67
Offset:0
Orientation:forward strand
Alignment:GGAGGTGGAG
GGAGGGGGAA

Run/dmmpmm(Papatsenko)/fly

Match Rank:7
Score:0.66
Offset:0
Orientation:forward strand
Alignment:GGAGGTGGAG
GGCGGTG---

POL003.1_GC-box/Jaspar

Match Rank:8
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-GGAGGTGGAG---
AGGGGGCGGGGCTG

SP2/MA0516.1/Jaspar

Match Rank:9
Score:0.65
Offset:-4
Orientation:reverse strand
Alignment:----GGAGGTGGAG-
GGGNGGGGGCGGGGC

Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.64
Offset:0
Orientation:forward strand
Alignment:GGAGGTGGAG
GGGGGGGG--