Information for 5-TCCTTWCC (Motif 12)


Reverse Opposite:

p-value:1e-5
log p-value:-1.253e+01
Information Content per bp:1.878
Number of Target Sequences with motif26.0
Percentage of Target Sequences with motif1.78%
Number of Background Sequences with motif3.8
Percentage of Background Sequences with motif0.24%
Average Position of motif in Targets33.0 +/- 17.2bp
Average Position of motif in Background35.4 +/- 17.3bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.12
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

POPTR_0002s00440g/MA0955.1/Jaspar

Match Rank:1
Score:0.75
Offset:1
Orientation:reverse strand
Alignment:TCCTTWCC
-CCGTACN

ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:2
Score:0.71
Offset:-1
Orientation:reverse strand
Alignment:-TCCTTWCC-
TKCTGTTCCA

SPL11/MA1056.1/Jaspar

Match Rank:3
Score:0.70
Offset:-1
Orientation:reverse strand
Alignment:-TCCTTWCC---
NTCCGTACGNNN

SD0001.1_at_AC_acceptor/Jaspar

Match Rank:4
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-TCCTTWCC--
NNACTTACCTN

SPL14(SBP)/Arabidopsis thaliana/AthaMap

Match Rank:5
Score:0.67
Offset:-5
Orientation:forward strand
Alignment:-----TCCTTWCC------
TCGCGTCCGTACAGGAGGG

SPL14/MA0586.1/Jaspar

Match Rank:6
Score:0.67
Offset:-5
Orientation:forward strand
Alignment:-----TCCTTWCC------
TCGCGTCCGTACAGGAGGG

SPL5/MA1059.1/Jaspar

Match Rank:7
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:TCCTTWCC-
NCCGTACNN

ZmHOX2a(1)(HD-HOX)/Zea mays/AthaMap

Match Rank:8
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-TCCTTWCC
GTCCTAA--

SPL12/MA1057.1/Jaspar

Match Rank:9
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:TCCTTWCC
NCCGTACN

YKL222C/MA0428.1/Jaspar

Match Rank:10
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---TCCTTWCC
ATTTCCGTT--