Information for 7-CCCAGCCTGG (Motif 13)


Reverse Opposite:

p-value:1e-5
log p-value:-1.222e+01
Information Content per bp:1.866
Number of Target Sequences with motif45.0
Percentage of Target Sequences with motif3.08%
Number of Background Sequences with motif13.8
Percentage of Background Sequences with motif0.89%
Average Position of motif in Targets34.8 +/- 18.4bp
Average Position of motif in Background36.8 +/- 17.8bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

YML081W(MacIsaac)/Yeast

Match Rank:1
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:CCCAGCCTGG
TTCAGACTGG

SWI5/Literature(Harbison)/Yeast

Match Rank:2
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:CCCAGCCTGG
-CCAGCA---

ACE2/MA0267.1/Jaspar

Match Rank:3
Score:0.66
Offset:0
Orientation:forward strand
Alignment:CCCAGCCTGG
ACCAGCA---

SWI5/MA0402.1/Jaspar

Match Rank:4
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-CCCAGCCTGG
AACCAGCA---

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:5
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:CCCAGCCTGG
-BCAGACWA-

CRZ1(MacIsaac)/Yeast

Match Rank:6
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:CCCAGCCTGG
--CAGCCAC-

SWI5(MacIsaac)/Yeast

Match Rank:7
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-CCCAGCCTGG
AACCAGCA---

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:8
Score:0.62
Offset:2
Orientation:forward strand
Alignment:CCCAGCCTGG
--CTGTCTGG

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:9
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--CCCAGCCTGG
TGCCCAGNHW--

Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer

Match Rank:10
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-CCCAGCCTGG----
TCCCAGMCRAGCCCC