Information for 1-GAGAATBRCTTG (Motif 2)


Reverse Opposite:

p-value:1e-8
log p-value:-1.899e+01
Information Content per bp:1.683
Number of Target Sequences with motif60.0
Percentage of Target Sequences with motif4.11%
Number of Background Sequences with motif14.7
Percentage of Background Sequences with motif0.95%
Average Position of motif in Targets41.7 +/- 17.9bp
Average Position of motif in Background38.3 +/- 20.8bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

NAC92/MA1044.1/Jaspar

Match Rank:1
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:GAGAATBRCTTG---
---NNTGGCGTGTNN

GAT3(MacIsaac)/Yeast

Match Rank:2
Score:0.58
Offset:4
Orientation:forward strand
Alignment:GAGAATBRCTTG
----ATAACATG

pho/dmmpmm(Bergman)/fly

Match Rank:3
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:GAGAATBRCTTG
---AATGGC---

PB0139.1_Irf5_2/Jaspar

Match Rank:4
Score:0.55
Offset:-6
Orientation:forward strand
Alignment:------GAGAATBRCTTG
TTGACCGAGAATTCC---

NAC058/MA0938.1/Jaspar

Match Rank:5
Score:0.53
Offset:5
Orientation:reverse strand
Alignment:GAGAATBRCTTG-
-----TTGCGTGN

PB0138.1_Irf4_2/Jaspar

Match Rank:6
Score:0.53
Offset:-6
Orientation:reverse strand
Alignment:------GAGAATBRCTTG
GNNACCGAGAATNNN---

PH0017.1_Cux1_2/Jaspar

Match Rank:7
Score:0.53
Offset:-4
Orientation:forward strand
Alignment:----GAGAATBRCTTG
TAATGATGATCACTA-

NTL9/MA1046.1/Jaspar

Match Rank:8
Score:0.52
Offset:4
Orientation:reverse strand
Alignment:GAGAATBRCTTG-
----ATTACTTAA

RIM101/MA0368.1/Jaspar

Match Rank:9
Score:0.52
Offset:8
Orientation:reverse strand
Alignment:GAGAATBRCTTG---
--------CTTGGCG

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:10
Score:0.51
Offset:0
Orientation:reverse strand
Alignment:GAGAATBRCTTG
GTTAATGGCC--