Information for 1-TGGTATTTTG (Motif 4)


Reverse Opposite:

p-value:1e-7
log p-value:-1.828e+01
Information Content per bp:1.835
Number of Target Sequences with motif29.0
Percentage of Target Sequences with motif1.98%
Number of Background Sequences with motif2.0
Percentage of Background Sequences with motif0.13%
Average Position of motif in Targets39.0 +/- 20.3bp
Average Position of motif in Background44.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-0.9
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown4/Drosophila-Promoters/Homer

Match Rank:1
Score:0.86
Offset:-2
Orientation:reverse strand
Alignment:--TGGTATTTTG
TKYGGTATTTTT

pan/dmmpmm(Down)/fly

Match Rank:2
Score:0.72
Offset:3
Orientation:reverse strand
Alignment:TGGTATTTTG
---TGTTTTT

MEF2C/MA0497.1/Jaspar

Match Rank:3
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:TGGTATTTTG-----
TTCTATTTTTAGNNN

br-Z1/dmmpmm(Pollard)/fly

Match Rank:4
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:TGGTATTTTG
TTCTATTT--

Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer

Match Rank:5
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:TGGTATTTTG---
-KCTATTTTTRGH

PB0119.1_Foxa2_2/Jaspar

Match Rank:6
Score:0.67
Offset:-5
Orientation:reverse strand
Alignment:-----TGGTATTTTG
NCNTTTGTTATTTNN

PB0106.1_Arid5a_2/Jaspar

Match Rank:7
Score:0.67
Offset:-5
Orientation:reverse strand
Alignment:-----TGGTATTTTG--
TNNTTTCGTATTNNANN

Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer

Match Rank:8
Score:0.66
Offset:1
Orientation:forward strand
Alignment:TGGTATTTTG---
-GCTATTTTTAGC

GTS1(MacIsaac)/Yeast

Match Rank:9
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-TGGTATTTTG
TTGGTA-----

hb/dmmpmm(Noyes)/fly

Match Rank:10
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:TGGTATTTTG--
TGTTTTTTTNGT