Information for 2-GAGCCAAGAT (Motif 5)


Reverse Opposite:

p-value:1e-7
log p-value:-1.821e+01
Information Content per bp:1.647
Number of Target Sequences with motif64.0
Percentage of Target Sequences with motif4.38%
Number of Background Sequences with motif17.9
Percentage of Background Sequences with motif1.16%
Average Position of motif in Targets38.6 +/- 18.4bp
Average Position of motif in Background41.6 +/- 16.2bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MAC1/Literature(Harbison)/Yeast

Match Rank:1
Score:0.74
Offset:0
Orientation:forward strand
Alignment:GAGCCAAGAT
GAGCAAA---

RIM101/MA0368.1/Jaspar

Match Rank:2
Score:0.73
Offset:1
Orientation:forward strand
Alignment:GAGCCAAGAT
-CGCCAAG--

Mecom/MA0029.1/Jaspar

Match Rank:3
Score:0.71
Offset:0
Orientation:forward strand
Alignment:GAGCCAAGAT----
AAGATAAGATAACA

MAC1/MA0326.1/Jaspar

Match Rank:4
Score:0.71
Offset:-1
Orientation:reverse strand
Alignment:-GAGCCAAGAT
TGAGCAAA---

GATA3/MA0037.2/Jaspar

Match Rank:5
Score:0.70
Offset:1
Orientation:forward strand
Alignment:GAGCCAAGAT
-AGATAAGA-

GLN3(MacIsaac)/Yeast

Match Rank:6
Score:0.68
Offset:1
Orientation:forward strand
Alignment:GAGCCAAGAT-
-AGATAAGATA

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:7
Score:0.67
Offset:0
Orientation:forward strand
Alignment:GAGCCAAGAT-
AAGGCAAGTGT

GAT1/GAT1_RAPA/1-GZF3,2-GLN3(Harbison)/Yeast

Match Rank:8
Score:0.67
Offset:1
Orientation:forward strand
Alignment:GAGCCAAGAT
-AGATAAG--

GAT1(MacIsaac)/Yeast

Match Rank:9
Score:0.67
Offset:1
Orientation:forward strand
Alignment:GAGCCAAGAT
-AGATAAG--

RIM101/Literature(Harbison)/Yeast

Match Rank:10
Score:0.67
Offset:1
Orientation:forward strand
Alignment:GAGCCAAGAT
-TGCCAAG--