Information for 3-WAAAAACAAWAA (Motif 9)


Reverse Opposite:

p-value:1e-6
log p-value:-1.418e+01
Information Content per bp:1.748
Number of Target Sequences with motif26.0
Percentage of Target Sequences with motif1.78%
Number of Background Sequences with motif2.1
Percentage of Background Sequences with motif0.14%
Average Position of motif in Targets33.4 +/- 18.4bp
Average Position of motif in Background23.1 +/- 12.7bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0123.1_Foxl1_2/Jaspar

Match Rank:1
Score:0.81
Offset:-3
Orientation:forward strand
Alignment:---WAAAAACAAWAA-
ATATCAAAACAAAACA

pan/dmmpmm(Down)/fly

Match Rank:2
Score:0.80
Offset:1
Orientation:forward strand
Alignment:WAAAAACAAWAA
-AAAAACA----

br-Z3/dmmpmm(Down)/fly

Match Rank:3
Score:0.78
Offset:1
Orientation:reverse strand
Alignment:WAAAAACAAWAA
-ATAAACAAAA-

HCM1/MA0317.1/Jaspar

Match Rank:4
Score:0.77
Offset:1
Orientation:forward strand
Alignment:WAAAAACAAWAA
-ATAAACAA---

SeqBias: polyA-repeat

Match Rank:5
Score:0.77
Offset:1
Orientation:forward strand
Alignment:WAAAAACAAWAA
-AAAAAAAAAA-

PB0062.1_Sox12_1/Jaspar

Match Rank:6
Score:0.76
Offset:-2
Orientation:reverse strand
Alignment:--WAAAAACAAWAA
NTTNAGAACAATTA

ara/dmmpmm(Noyes_hd)/fly

Match Rank:7
Score:0.76
Offset:0
Orientation:forward strand
Alignment:WAAAAACAAWAA
AAATAACAAA--

SRY/MA0084.1/Jaspar

Match Rank:8
Score:0.76
Offset:1
Orientation:forward strand
Alignment:WAAAAACAAWAA
-GTAAACAAT--

Mirr/dmmpmm(Noyes_hd)/fly

Match Rank:9
Score:0.75
Offset:0
Orientation:forward strand
Alignment:WAAAAACAAWAA
AAAAAACAAA--

ONECUT3/MA0757.1/Jaspar

Match Rank:10
Score:0.75
Offset:-1
Orientation:forward strand
Alignment:-WAAAAACAAWAA-
AAAAAATCAATAAT