Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 1459)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 1553)	% of Background Sequences with Motif
Unknown4/Drosophila-Promoters/Homer	AAAAATACCRMA	1e-4	-1.050e+01	0.0107	27.0	1.85%	5.9	0.38%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e-2	-5.055e+00	1.0000	7.0	0.48%	0.8	0.05%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e-2	-4.927e+00	1.0000	88.0	6.02%	63.0	4.08%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-2	-4.831e+00	1.0000	83.0	5.68%	58.8	3.81%
IBL1(bHLH)/Seedling-IBL1-ChIP-Seq(GSE51120)/Homer	CACGTGCC	1e-2	-4.721e+00	1.0000	71.0	4.86%	48.4	3.13%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e-2	-4.662e+00	1.0000	29.0	1.98%	14.5	0.94%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e-1	-4.568e+00	1.0000	113.0	7.73%	86.1	5.57%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e-1	-4.566e+00	1.0000	61.0	4.18%	40.1	2.59%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-1	-3.952e+00	1.0000	71.0	4.86%	51.7	3.35%
PHA-4(Forkhead)/cElegans-Embryos-PHA4-ChIP-Seq(modEncode)/Homer	KTGTTTGC	1e-1	-3.899e+00	1.0000	265.0	18.14%	236.4	15.30%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e-1	-3.740e+00	1.0000	14.0	0.96%	5.7	0.37%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e-1	-3.553e+00	1.0000	44.0	3.01%	29.1	1.88%
DPL-1(E2F)/cElegans-Adult-ChIP-Seq(modEncode)/Homer	TAGCGCGC	1e-1	-3.528e+00	1.0000	7.0	0.48%	1.5	0.09%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e-1	-3.524e+00	1.0000	52.0	3.56%	36.0	2.33%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e-1	-3.472e+00	1.0000	19.0	1.30%	9.8	0.64%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)	NNAYTTCCTGHN	1e-1	-3.396e+00	1.0000	48.0	3.29%	34.0	2.20%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e-1	-3.322e+00	1.0000	30.0	2.05%	18.0	1.17%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-1	-3.267e+00	1.0000	52.0	3.56%	37.7	2.44%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e-1	-3.232e+00	1.0000	45.0	3.08%	31.8	2.06%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e-1	-3.226e+00	1.0000	17.0	1.16%	8.0	0.52%
Unknown5/Drosophila-Promoters/Homer	GCTGATAASV	1e-1	-3.101e+00	1.0000	34.0	2.33%	22.2	1.44%
ELT-3(Gata)/cElegans-L1-ELT3-ChIP-Seq(modEncode)/Homer	AWTGATAAGA	1e-1	-2.942e+00	1.0000	46.0	3.15%	33.1	2.14%
AARE(HLH)/mES-cMyc-ChIP-Seq/Homer	GATTGCATCA	1e-1	-2.924e+00	1.0000	6.0	0.41%	1.5	0.10%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e-1	-2.911e+00	1.0000	20.0	1.37%	11.4	0.74%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e-1	-2.887e+00	1.0000	4.0	0.27%	1.0	0.06%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-1	-2.853e+00	1.0000	73.0	5.00%	58.8	3.81%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e-1	-2.705e+00	1.0000	87.0	5.95%	72.8	4.71%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e-1	-2.568e+00	1.0000	7.0	0.48%	3.0	0.19%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e-1	-2.540e+00	1.0000	43.0	2.94%	32.6	2.11%
PQM-1(?)/cElegans-L3-ChIP-Seq(modEncode)/Homer	ACTGATAAGA	1e-1	-2.458e+00	1.0000	28.0	1.92%	19.5	1.26%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e-1	-2.343e+00	1.0000	8.0	0.55%	3.5	0.22%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e-1	-2.336e+00	1.0000	5.0	0.34%	2.0	0.13%
Unknown6/Drosophila-Promoters/Homer	AATTTTAAAA	1e0	-2.300e+00	1.0000	108.0	7.39%	95.4	6.17%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	-2.272e+00	1.0000	61.0	4.18%	50.7	3.28%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-2.254e+00	1.0000	35.0	2.40%	26.2	1.70%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e0	-2.244e+00	1.0000	13.0	0.89%	7.8	0.51%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-2.229e+00	1.0000	19.0	1.30%	12.1	0.78%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e0	-2.165e+00	1.0000	3.0	0.21%	0.0	0.00%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-2.165e+00	1.0000	3.0	0.21%	0.0	0.00%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-2.165e+00	1.0000	3.0	0.21%	0.8	0.05%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-2.165e+00	1.0000	3.0	0.21%	0.8	0.05%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-2.165e+00	1.0000	3.0	0.21%	0.0	0.00%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-2.165e+00	1.0000	3.0	0.21%	0.0	0.00%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e0	-2.135e+00	1.0000	81.0	5.54%	70.2	4.55%
SFP1/SacCer-Promoters/Homer	DDAAAAATTTTY	1e0	-2.098e+00	1.0000	15.0	1.03%	9.6	0.62%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-2.092e+00	1.0000	92.0	6.30%	81.0	5.25%
TOD6?/SacCer-Promoters/Homer	GCGATGAGMT	1e0	-2.065e+00	1.0000	6.0	0.41%	2.0	0.13%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e0	-2.061e+00	1.0000	47.0	3.22%	38.7	2.51%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-2.061e+00	1.0000	47.0	3.22%	38.9	2.52%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e0	-2.041e+00	1.0000	16.0	1.10%	10.6	0.69%
EGL-5(Homeobox)/cElegans-L3-EGL5-ChIP-Seq(modEncode)/Homer	ATTTAATGGG	1e0	-2.019e+00	1.0000	144.0	9.86%	133.6	8.65%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	-1.981e+00	1.0000	38.0	2.60%	30.5	1.97%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-1.928e+00	1.0000	64.0	4.38%	55.9	3.62%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e0	-1.905e+00	1.0000	12.0	0.82%	7.8	0.51%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-1.785e+00	1.0000	8.0	0.55%	4.1	0.26%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	-1.785e+00	1.0000	8.0	0.55%	4.6	0.30%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e0	-1.769e+00	1.0000	4.0	0.27%	1.2	0.07%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e0	-1.740e+00	1.0000	80.0	5.48%	72.1	4.67%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	-1.719e+00	1.0000	99.0	6.78%	91.2	5.91%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e0	-1.714e+00	1.0000	47.0	3.22%	40.0	2.59%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e0	-1.708e+00	1.0000	48.0	3.29%	41.5	2.68%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e0	-1.702e+00	1.0000	9.0	0.62%	6.0	0.39%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e0	-1.669e+00	1.0000	31.0	2.12%	25.2	1.63%
SeqBias: CG bias	SSSSSSSSSS	1e0	-1.656e+00	1.0000	402.0	27.52%	402.8	26.07%
Tal1	CATCTG	1e0	-1.631e+00	1.0000	71.0	4.86%	64.9	4.20%
SeqBias: TA-repeat	TATATATATA	1e0	-1.610e+00	1.0000	455.0	31.14%	458.4	29.67%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-1.588e+00	1.0000	11.0	0.75%	7.2	0.46%
SeqBias: C/A-bias	MMMMMMMMMM	1e0	-1.567e+00	1.0000	1400.0	95.82%	1469.6	95.13%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-1.558e+00	1.0000	47.0	3.22%	41.6	2.69%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e0	-1.535e+00	1.0000	25.0	1.71%	20.9	1.35%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e0	-1.524e+00	1.0000	220.0	15.06%	216.8	14.03%
PIF4(bHLH)/Seedling-PIF4-ChIP-Seq(GSE35315)/Homer	NNBCACGTGN	1e0	-1.521e+00	1.0000	61.0	4.18%	55.7	3.60%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-1.514e+00	1.0000	13.0	0.89%	10.0	0.64%
PABPC1(?)/MEL-PABC1-CLIP-Seq(GSE69755)/Homer	HAATAAAGNN	1e0	-1.500e+00	1.0000	207.0	14.17%	203.2	13.15%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-1.482e+00	1.0000	6.0	0.41%	3.3	0.22%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e0	-1.469e+00	1.0000	317.0	21.70%	317.3	20.54%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e0	-1.461e+00	1.0000	15.0	1.03%	11.7	0.76%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e0	-1.443e+00	1.0000	2.0	0.14%	0.0	0.00%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-1.443e+00	1.0000	2.0	0.14%	0.8	0.05%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e0	-1.443e+00	1.0000	2.0	0.14%	0.0	0.00%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e0	-1.443e+00	1.0000	2.0	0.14%	0.0	0.00%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	-1.443e+00	1.0000	2.0	0.14%	0.0	0.00%
GEI-11(Myb?)/cElegans-L4-GEI11-ChIP-Seq(modEncode)/Homer	CCGACAYYTYACGGG	1e0	-1.443e+00	1.0000	2.0	0.14%	0.0	0.00%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-1.443e+00	1.0000	2.0	0.14%	0.7	0.05%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	-1.443e+00	1.0000	2.0	0.14%	0.0	0.00%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e0	-1.436e+00	1.0000	39.0	2.67%	34.3	2.22%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e0	-1.429e+00	1.0000	41.0	2.81%	36.8	2.38%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e0	-1.422e+00	1.0000	17.0	1.16%	13.6	0.88%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e0	-1.412e+00	1.0000	7.0	0.48%	4.7	0.31%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e0	-1.412e+00	1.0000	7.0	0.48%	4.5	0.29%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-1.393e+00	1.0000	19.0	1.30%	15.4	1.00%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-1.381e+00	1.0000	20.0	1.37%	16.9	1.09%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e0	-1.360e+00	1.0000	22.0	1.51%	18.1	1.17%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e0	-1.326e+00	1.0000	104.0	7.12%	100.1	6.48%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-1.323e+00	1.0000	9.0	0.62%	6.3	0.41%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e0	-1.323e+00	1.0000	9.0	0.62%	6.7	0.44%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-1.300e+00	1.0000	33.0	2.26%	29.7	1.93%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-1.300e+00	1.0000	84.0	5.75%	81.0	5.24%
caudal(Homeobox)/Drosophila-Embryos-ChIP-Chip(modEncode)/Homer	GGYCATAAAW	1e0	-1.285e+00	1.0000	69.0	4.72%	65.0	4.21%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e0	-1.278e+00	1.0000	57.0	3.90%	53.2	3.44%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-1.278e+00	1.0000	49.0	3.35%	45.5	2.94%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-1.278e+00	1.0000	50.0	3.42%	46.2	2.99%
LHY(Myb)/Seedling-LHY-ChIP-Seq(GSE52175)/Homer	ADAAATATCT	1e0	-1.238e+00	1.0000	103.0	7.05%	100.2	6.48%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-1.223e+00	1.0000	14.0	0.96%	11.9	0.77%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e0	-1.212e+00	1.0000	15.0	1.03%	12.9	0.83%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-1.202e+00	1.0000	16.0	1.10%	13.8	0.90%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e0	-1.187e+00	1.0000	18.0	1.23%	15.6	1.01%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-1.176e+00	1.0000	65.0	4.45%	62.7	4.06%
SPCH(bHLH)/Seedling-SPCH-ChIP-Seq(GSE57497)/Homer	WNBCACGTGA	1e0	-1.150e+00	1.0000	41.0	2.81%	38.1	2.47%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-1.150e+00	1.0000	32.0	2.19%	29.7	1.92%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e0	-1.150e+00	1.0000	40.0	2.74%	37.9	2.46%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e0	-1.149e+00	1.0000	36.0	2.46%	33.4	2.16%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-1.146e+00	1.0000	4.0	0.27%	2.0	0.13%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-1.146e+00	1.0000	4.0	0.27%	2.0	0.13%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e0	-1.130e+00	1.0000	91.0	6.23%	89.3	5.78%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e0	-1.095e+00	1.0000	111.0	7.60%	110.2	7.13%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-1.069e+00	1.0000	6.0	0.41%	4.2	0.27%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-1.050e+00	1.0000	7.0	0.48%	5.4	0.35%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	-1.050e+00	1.0000	7.0	0.48%	5.2	0.33%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e0	-1.050e+00	1.0000	7.0	0.48%	5.3	0.35%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-1.050e+00	1.0000	7.0	0.48%	5.1	0.33%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-1.025e+00	1.0000	9.0	0.62%	7.1	0.46%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e0	-1.004e+00	1.0000	27.0	1.85%	25.8	1.67%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e0	-1.004e+00	1.0000	13.0	0.89%	11.9	0.77%
SeqBias: G/A bias	RRRRRRRRRR	1e0	-9.984e-01	1.0000	1426.0	97.60%	1503.1	97.30%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e0	-9.983e-01	1.0000	21.0	1.44%	19.3	1.25%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-9.977e-01	1.0000	18.0	1.23%	17.0	1.10%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-9.861e-01	1.0000	66.0	4.52%	65.9	4.26%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e0	-9.491e-01	1.0000	83.0	5.68%	83.9	5.43%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e0	-9.469e-01	1.0000	109.0	7.46%	110.7	7.16%
Initiator/Drosophila-Promoters/Homer	NTCAGTYG	1e0	-9.394e-01	1.0000	131.0	8.97%	133.6	8.65%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-9.308e-01	1.0000	174.0	11.91%	178.2	11.53%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e0	-9.158e-01	1.0000	41.0	2.81%	40.2	2.60%
PIF5ox(bHLH)/Arabidopsis-PIF5ox-ChIP-Seq(GSE35062)/Homer	BCACGTGVDN	1e0	-9.127e-01	1.0000	40.0	2.74%	39.1	2.53%
RLR1?/SacCer-Promoters/Homer	WTTTTCYYTTTT	1e0	-9.119e-01	1.0000	70.0	4.79%	70.9	4.59%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e0	-9.032e-01	1.0000	37.0	2.53%	36.3	2.35%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e0	-8.968e-01	1.0000	65.0	4.45%	65.0	4.21%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-8.935e-01	1.0000	34.0	2.33%	34.0	2.20%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e0	-8.874e-01	1.0000	62.0	4.24%	62.8	4.07%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e0	-8.693e-01	1.0000	27.0	1.85%	26.1	1.69%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e0	-8.582e-01	1.0000	24.0	1.64%	23.2	1.50%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e0	-8.508e-01	1.0000	51.0	3.49%	51.1	3.30%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e0	-8.505e-01	1.0000	22.0	1.51%	21.1	1.36%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-8.465e-01	1.0000	21.0	1.44%	20.8	1.35%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	-8.261e-01	1.0000	68.0	4.65%	69.4	4.49%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e0	-8.254e-01	1.0000	16.0	1.10%	15.9	1.03%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e0	-8.161e-01	1.0000	14.0	0.96%	13.1	0.85%
Cbf1(bHLH)/Yeast-Cbf1-ChIP-Seq(GSE29506)/Homer	TCACGTGAYH	1e0	-8.062e-01	1.0000	12.0	0.82%	11.1	0.72%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	-7.956e-01	1.0000	10.0	0.68%	9.7	0.62%
Unknown4/Arabidopsis-Promoters/Homer	CKTCKTCTTY	1e0	-7.945e-01	1.0000	59.0	4.04%	60.1	3.89%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e0	-7.840e-01	1.0000	8.0	0.55%	7.1	0.46%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e0	-7.840e-01	1.0000	8.0	0.55%	7.1	0.46%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-7.840e-01	1.0000	8.0	0.55%	7.0	0.46%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-7.791e-01	1.0000	33.0	2.26%	33.7	2.18%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-7.777e-01	1.0000	7.0	0.48%	6.8	0.44%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e0	-7.758e-01	1.0000	95.0	6.50%	98.2	6.36%
Unknown1(NR/Ini-like)/Drosophila-Promoters/Homer	MYGGTCACACTG	1e0	-7.636e-01	1.0000	5.0	0.34%	4.8	0.31%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-7.636e-01	1.0000	5.0	0.34%	4.2	0.27%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-7.636e-01	1.0000	5.0	0.34%	4.5	0.29%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e0	-7.555e-01	1.0000	4.0	0.27%	3.3	0.22%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	-7.463e-01	1.0000	3.0	0.21%	2.7	0.17%
ABF1/SacCer-Promoters/Homer	CGTRNAAARTGA	1e0	-7.463e-01	1.0000	3.0	0.21%	2.9	0.19%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e0	-7.463e-01	1.0000	3.0	0.21%	2.5	0.16%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-7.463e-01	1.0000	3.0	0.21%	2.4	0.15%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-7.355e-01	1.0000	2.0	0.14%	1.8	0.12%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-7.355e-01	1.0000	2.0	0.14%	1.8	0.12%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	-7.212e-01	1.0000	1.0	0.07%	0.0	0.00%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e0	-7.212e-01	1.0000	1.0	0.07%	1.0	0.06%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e0	-7.212e-01	1.0000	1.0	0.07%	1.0	0.06%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e0	-7.212e-01	1.0000	1.0	0.07%	0.0	0.00%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e0	-7.212e-01	1.0000	1.0	0.07%	0.9	0.06%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e0	-7.195e-01	1.0000	78.0	5.34%	81.6	5.28%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e0	-7.057e-01	1.0000	38.0	2.60%	39.2	2.54%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e0	-7.008e-01	1.0000	19.0	1.30%	19.8	1.28%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e0	-7.008e-01	1.0000	19.0	1.30%	19.9	1.29%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e0	-6.793e-01	1.0000	50.0	3.42%	52.0	3.37%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-6.781e-01	1.0000	16.0	1.10%	16.2	1.05%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e0	-6.743e-01	1.0000	100.0	6.84%	105.6	6.84%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e0	-6.697e-01	1.0000	15.0	1.03%	15.4	1.00%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-6.675e-01	1.0000	149.0	10.20%	157.8	10.21%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e0	-6.621e-01	1.0000	147.0	10.06%	155.4	10.06%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e0	-6.513e-01	1.0000	13.0	0.89%	13.1	0.85%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e0	-6.513e-01	1.0000	13.0	0.89%	13.1	0.85%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-6.408e-01	1.0000	42.0	2.87%	44.6	2.88%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e0	-6.377e-01	1.0000	89.0	6.09%	94.8	6.14%
GAGA-repeat/SacCer-Promoters/Homer	CTYTCTYTCTCTCTC	1e0	-6.358e-01	1.0000	288.0	19.71%	305.5	19.77%
E-box/Arabidopsis-Promoters/Homer	GCCACGTG	1e0	-6.301e-01	1.0000	11.0	0.75%	11.9	0.77%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-6.301e-01	1.0000	11.0	0.75%	11.9	0.77%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-6.180e-01	1.0000	10.0	0.68%	10.9	0.70%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-6.180e-01	1.0000	10.0	0.68%	10.2	0.66%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e0	-6.047e-01	1.0000	9.0	0.62%	9.1	0.59%
SeqBias: CA-repeat	CACACACACA	1e0	-5.932e-01	1.0000	366.0	25.05%	390.0	25.24%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-5.913e-01	1.0000	20.0	1.37%	21.5	1.39%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e0	-5.751e-01	1.0000	72.0	4.93%	78.0	5.05%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-5.646e-01	1.0000	42.0	2.87%	45.6	2.95%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e0	-5.591e-01	1.0000	41.0	2.81%	44.2	2.86%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e0	-5.569e-01	1.0000	28.0	1.92%	30.5	1.97%
Pho4(bHLH)/Yeast-Pho4-ChIP-Seq(GSE29506)/Homer	AAGCACGTGBGD	1e0	-5.532e-01	1.0000	6.0	0.41%	6.7	0.43%
SeqBias: GA-repeat	GAGAGAGAGA	1e0	-5.492e-01	1.0000	473.0	32.38%	505.0	32.69%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e0	-5.297e-01	1.0000	5.0	0.34%	5.7	0.37%
Unknown2/Drosophila-Promoters/Homer	CATCMCTA	1e0	-5.282e-01	1.0000	48.0	3.29%	52.8	3.42%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-5.282e-01	1.0000	48.0	3.29%	52.1	3.37%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e0	-5.230e-01	1.0000	47.0	3.22%	51.7	3.34%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e0	-5.204e-01	1.0000	72.0	4.93%	78.3	5.07%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e0	-5.181e-01	1.0000	23.0	1.57%	25.6	1.66%
SeqBias: GCW-triplet	GCWGCWGCWGCW	1e0	-5.140e-01	1.0000	1366.0	93.50%	1446.2	93.61%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	-5.085e-01	1.0000	109.0	7.46%	118.8	7.69%
REB1/SacCer-Promoters/Homer	KCCGGGTAAYRR	1e0	-5.004e-01	1.0000	4.0	0.27%	4.5	0.29%
SeqBias: polyC-repeat	CCCCCCCCCC	1e0	-4.972e-01	1.0000	1078.0	73.79%	1145.4	74.14%
Oct6(POU,Homeobox)/NPC-Oct6-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e0	-4.969e-01	1.0000	31.0	2.12%	34.6	2.24%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e0	-4.920e-01	1.0000	11.0	0.75%	12.8	0.83%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	-4.913e-01	1.0000	117.0	8.01%	127.4	8.24%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e0	-4.842e-01	1.0000	40.0	2.74%	44.8	2.90%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-4.821e-01	1.0000	51.0	3.49%	56.1	3.63%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e0	-4.605e-01	1.0000	17.0	1.16%	19.3	1.25%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e0	-4.594e-01	1.0000	9.0	0.62%	10.9	0.70%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	-4.585e-01	1.0000	187.0	12.80%	203.2	13.15%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e0	-4.403e-01	1.0000	8.0	0.55%	9.2	0.59%
Zelda(Zf)/Embryo-zld-ChIP-Seq(GSE65441)/Homer	KBCTACCTGW	1e0	-4.340e-01	1.0000	23.0	1.57%	26.9	1.74%
SUT1?/SacCer-Promoters/Homer	CCCCGCGC	1e0	-4.322e-01	1.0000	245.0	16.77%	266.6	17.26%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-4.280e-01	1.0000	147.0	10.06%	161.5	10.46%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-4.246e-01	1.0000	14.0	0.96%	16.1	1.04%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-4.246e-01	1.0000	14.0	0.96%	16.9	1.09%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e0	-4.190e-01	1.0000	71.0	4.86%	79.2	5.13%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-4.189e-01	1.0000	7.0	0.48%	8.9	0.57%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-4.055e-01	1.0000	2.0	0.14%	2.9	0.19%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e0	-4.055e-01	1.0000	2.0	0.14%	2.3	0.15%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-4.055e-01	1.0000	2.0	0.14%	2.2	0.14%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e0	-4.055e-01	1.0000	2.0	0.14%	2.6	0.17%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e0	-4.030e-01	1.0000	78.0	5.34%	87.2	5.65%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-3.967e-01	1.0000	12.0	0.82%	14.0	0.91%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-3.942e-01	1.0000	6.0	0.41%	7.8	0.51%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-3.942e-01	1.0000	6.0	0.41%	7.5	0.48%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	-3.942e-01	1.0000	6.0	0.41%	7.4	0.48%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e0	-3.883e-01	1.0000	263.0	18.00%	287.8	18.63%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-3.873e-01	1.0000	26.0	1.78%	30.4	1.97%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e0	-3.848e-01	1.0000	18.0	1.23%	21.0	1.36%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	-3.841e-01	1.0000	193.0	13.21%	212.9	13.78%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e0	-3.811e-01	1.0000	11.0	0.75%	13.8	0.90%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e0	-3.811e-01	1.0000	11.0	0.75%	13.3	0.86%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e0	-3.790e-01	1.0000	25.0	1.71%	29.2	1.89%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-3.654e-01	1.0000	5.0	0.34%	6.2	0.40%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e0	-3.643e-01	1.0000	10.0	0.68%	12.4	0.80%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	-3.542e-01	1.0000	38.0	2.60%	44.2	2.86%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e0	-3.496e-01	1.0000	15.0	1.03%	18.0	1.17%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-3.460e-01	1.0000	9.0	0.62%	11.3	0.73%
KANADI1(Myb)/Seedling-KAN1-ChIP-Seq(GSE48081)/Homer	ARGAATAWWN	1e0	-3.406e-01	1.0000	114.0	7.80%	128.8	8.34%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-3.306e-01	1.0000	4.0	0.27%	5.2	0.34%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e0	-3.259e-01	1.0000	8.0	0.55%	10.5	0.68%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e0	-3.248e-01	1.0000	26.0	1.78%	31.1	2.01%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-3.229e-01	1.0000	13.0	0.89%	16.5	1.07%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e0	-3.151e-01	1.0000	32.0	2.19%	38.5	2.49%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e0	-3.121e-01	1.0000	18.0	1.23%	22.3	1.44%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e0	-3.064e-01	1.0000	1.0	0.07%	1.2	0.08%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-3.035e-01	1.0000	7.0	0.48%	9.3	0.60%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-3.035e-01	1.0000	7.0	0.48%	9.9	0.64%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e0	-3.035e-01	1.0000	7.0	0.48%	9.3	0.60%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e0	-2.967e-01	1.0000	70.0	4.79%	81.1	5.25%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-2.928e-01	1.0000	11.0	0.75%	14.5	0.94%
TATA-box/SacCer-Promoters/Homer	BBHWTATATA	1e0	-2.922e-01	1.0000	60.0	4.11%	70.8	4.58%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-2.891e-01	1.0000	68.0	4.65%	79.0	5.12%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-2.889e-01	1.0000	106.0	7.26%	121.5	7.86%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-2.871e-01	1.0000	3.0	0.21%	4.8	0.31%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e0	-2.871e-01	1.0000	3.0	0.21%	4.6	0.30%
Unknown1/Arabidopsis-Promoters/Homer	RGGGTAWWWTHGTAA	1e0	-2.871e-01	1.0000	3.0	0.21%	5.0	0.32%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-2.785e-01	1.0000	6.0	0.41%	8.5	0.55%
PCF/Arabidopsis-Promoters/Homer	NNWWWTGGGCYTDDN	1e0	-2.775e-01	1.0000	15.0	1.03%	19.1	1.23%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	-2.700e-01	1.0000	119.0	8.15%	136.8	8.86%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-2.654e-01	1.0000	170.0	11.64%	192.9	12.49%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-2.607e-01	1.0000	96.0	6.57%	111.4	7.21%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e0	-2.603e-01	1.0000	31.0	2.12%	38.5	2.50%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-2.582e-01	1.0000	9.0	0.62%	12.6	0.81%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e0	-2.582e-01	1.0000	9.0	0.62%	12.9	0.84%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-2.321e-01	1.0000	27.0	1.85%	34.7	2.25%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	-2.314e-01	1.0000	33.0	2.26%	41.2	2.67%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-2.295e-01	1.0000	2.0	0.14%	4.0	0.26%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-2.295e-01	1.0000	2.0	0.14%	3.3	0.22%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e0	-2.295e-01	1.0000	2.0	0.14%	3.0	0.19%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e0	-2.290e-01	1.0000	21.0	1.44%	27.8	1.80%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-2.229e-01	1.0000	11.0	0.75%	15.1	0.97%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e0	-2.229e-01	1.0000	11.0	0.75%	15.8	1.02%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e0	-2.199e-01	1.0000	66.0	4.52%	79.3	5.13%
Dorsal(RHD)/Embryo-dl-ChIP-Seq(GSE65441)/Homer	GGGAAAAMCCCG	1e0	-2.178e-01	1.0000	7.0	0.48%	10.9	0.71%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-2.171e-01	1.0000	25.0	1.71%	32.2	2.08%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e0	-2.170e-01	1.0000	4.0	0.27%	6.7	0.44%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e0	-2.170e-01	1.0000	4.0	0.27%	6.1	0.40%
CES-1(Homeobox)/cElegans-L1-CES1-ChIP-Seq(modEncode)/Homer	AAATTSAATTTN	1e0	-2.154e-01	1.0000	50.0	3.42%	61.8	4.00%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-2.125e-01	1.0000	88.0	6.02%	104.3	6.75%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-2.048e-01	1.0000	41.0	2.81%	51.1	3.30%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e0	-2.026e-01	1.0000	54.0	3.70%	66.9	4.33%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e0	-1.990e-01	1.0000	28.0	1.92%	36.0	2.33%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e0	-1.967e-01	1.0000	99.0	6.78%	117.8	7.63%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-1.948e-01	1.0000	6.0	0.41%	9.5	0.61%
SOC1(MADS)/Seedling-SOC1-ChIP-Seq(GSE45846)/Homer	TWCCAWWTWTGG	1e0	-1.935e-01	1.0000	22.0	1.51%	29.7	1.92%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e0	-1.922e-01	1.0000	27.0	1.85%	35.2	2.28%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e0	-1.922e-01	1.0000	27.0	1.85%	35.6	2.30%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-1.909e-01	1.0000	9.0	0.62%	13.4	0.86%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-1.804e-01	1.0000	145.0	9.92%	169.2	10.95%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e0	-1.768e-01	1.0000	30.0	2.05%	39.3	2.54%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-1.738e-01	1.0000	35.0	2.40%	45.3	2.93%
SeqBias: CG-repeat	CGCGCGCGCG	1e0	-1.707e-01	1.0000	15.0	1.03%	21.9	1.42%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e0	-1.684e-01	1.0000	19.0	1.30%	26.3	1.70%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e0	-1.638e-01	1.0000	23.0	1.57%	31.6	2.05%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e0	-1.630e-01	1.0000	33.0	2.26%	43.7	2.83%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-1.626e-01	1.0000	57.0	3.90%	71.4	4.62%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-1.542e-01	1.0000	10.0	0.68%	15.3	0.99%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e0	-1.456e-01	1.0000	1.0	0.07%	2.0	0.13%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e0	-1.456e-01	1.0000	1.0	0.07%	2.4	0.16%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e0	-1.449e-01	1.0000	46.0	3.15%	59.9	3.88%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e0	-1.336e-01	1.0000	19.0	1.30%	27.5	1.78%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	-1.239e-01	1.0000	64.0	4.38%	81.8	5.30%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-1.189e-01	1.0000	21.0	1.44%	30.7	1.99%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e0	-1.178e-01	1.0000	50.0	3.42%	65.6	4.25%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-1.115e-01	1.0000	346.0	23.68%	395.6	25.61%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e0	-1.104e-01	1.0000	28.0	1.92%	39.7	2.57%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-1.093e-01	1.0000	128.0	8.76%	155.1	10.04%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-1.012e-01	1.0000	9.0	0.62%	15.0	0.97%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e0	-9.684e-02	1.0000	105.0	7.19%	130.8	8.47%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e0	-9.269e-02	1.0000	33.0	2.26%	46.2	2.99%
E-box/Drosophila-Promoters/Homer	AACAGCTGTTHN	1e0	-9.222e-02	1.0000	6.0	0.41%	11.4	0.74%
Unknown3/Arabidopsis-Promoters/Homer	AYTAAACCGG	1e0	-9.087e-02	1.0000	4.0	0.27%	9.0	0.58%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e0	-8.845e-02	1.0000	8.0	0.55%	14.3	0.93%
SeqBias: A/T bias	WWWWWWWWWW	1e0	-8.007e-02	1.0000	1177.0	80.56%	1274.6	82.51%
RBFox2(?)/Heart-RBFox2-CLIP-Seq(GSE57926)/Homer	TGCATGCA	1e0	-7.723e-02	1.0000	106.0	7.26%	133.0	8.61%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-7.631e-02	1.0000	18.0	1.23%	28.2	1.82%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-7.455e-02	1.0000	2.0	0.14%	5.6	0.36%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-7.455e-02	1.0000	2.0	0.14%	5.5	0.36%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e0	-7.236e-02	1.0000	32.0	2.19%	46.4	3.01%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-7.210e-02	1.0000	1.0	0.07%	3.4	0.22%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e0	-7.159e-02	1.0000	36.0	2.46%	51.5	3.33%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-6.934e-02	1.0000	49.0	3.35%	67.9	4.39%
TATA-box/Drosophila-Promoters/Homer	CTATAAAAGCSV	1e0	-6.696e-02	1.0000	3.0	0.21%	7.5	0.49%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-5.787e-02	1.0000	4.0	0.27%	9.3	0.60%
Pho2(bHLH)/Yeast-Pho2-ChIP-Seq(GSE29506)/Homer	CCCACGTGCT	1e0	-5.187e-02	1.0000	7.0	0.48%	14.8	0.96%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e0	-5.098e-02	1.0000	182.0	12.46%	223.8	14.49%
GAGA-repeat/Arabidopsis-Promoters/Homer	CTCTCTCTCY	1e0	-5.057e-02	1.0000	50.0	3.42%	70.8	4.58%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e0	-5.010e-02	1.0000	41.0	2.81%	59.5	3.85%
SeqBias: polyA-repeat	AAAAAAAAAA	1e0	-4.568e-02	1.0000	1393.0	95.35%	1490.6	96.49%
LIN-39(Homeobox)/cElegans.L3-LIN39-ChIP-Seq(modEncode)/Homer	ATGATTRATG	1e0	-4.515e-02	1.0000	99.0	6.78%	129.2	8.36%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	-4.466e-02	1.0000	117.0	8.01%	150.0	9.71%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-4.347e-02	1.0000	60.0	4.11%	83.7	5.42%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e0	-4.290e-02	1.0000	34.0	2.33%	51.5	3.33%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e0	-4.269e-02	1.0000	10.0	0.68%	19.4	1.25%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e0	-4.231e-02	1.0000	2.0	0.14%	6.3	0.41%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e0	-4.050e-02	1.0000	3.0	0.21%	8.8	0.57%
Trl(Zf)/S2-GAGAfactor-ChIP-Seq(GSE40646)/Homer	RGAGAGAG	1e0	-3.934e-02	1.0000	111.0	7.60%	144.3	9.34%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-3.657e-02	1.0000	51.0	3.49%	73.3	4.74%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e0	-2.913e-02	1.0000	22.0	1.51%	38.0	2.46%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e0	-2.717e-02	1.0000	16.0	1.10%	29.2	1.89%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e0	-2.652e-02	1.0000	169.0	11.57%	214.1	13.86%
HLH-1(bHLH)/cElegans-Embryo-HLH1-ChIP-Seq(modEncode)/Homer	RACAGCTGTTBH	1e0	-2.012e-02	1.0000	21.0	1.44%	37.5	2.43%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e0	-1.731e-02	1.0000	147.0	10.06%	192.5	12.46%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-1.440e-02	1.0000	3.0	0.21%	10.8	0.70%
SEP3(MADS)/Arabidoposis-Flower-Sep3-ChIP-Seq/Homer	CCAAAAAGGG	1e0	-1.376e-02	1.0000	80.0	5.48%	114.2	7.39%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-1.298e-02	1.0000	5.0	0.34%	14.2	0.92%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e0	-1.235e-02	1.0000	17.0	1.16%	33.1	2.14%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-8.470e-03	1.0000	3.0	0.21%	11.2	0.73%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e0	-6.242e-03	1.0000	21.0	1.44%	41.5	2.68%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-4.132e-03	1.0000	2.0	0.14%	10.1	0.66%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-1.937e-03	1.0000	46.0	3.15%	80.1	5.18%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-2.880e-04	1.0000	26.0	1.78%	58.4	3.78%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-0.000e+00	1.0000	0.0	0.00%	2.6	0.17%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-0.000e+00	1.0000	0.0	0.00%	2.8	0.18%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e0	-0.000e+00	1.0000	0.0	0.00%	2.9	0.19%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
Unknown2/Arabidopsis-Promoters/Homer	AAACGACGTCGTTTT	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	0.000e+00	1.0000	0.0	0.00%	0.9	0.06%
DREF/Drosophila-Promoters/Homer	AVYTATCGATAD	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
 Ik-1	NHTTGGGAATRCC	1e0	0.000e+00	1.0000	1461.0	100.00%	1544.9	100.00%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
LIN-15B(Zf)/cElegans-L3-LIN15B-ChIP-Seq(modEncode)/Homer	CARTGGAGCGCRYTTGCATT	1e0	0.000e+00	1.0000	0.0	0.00%	1.0	0.06%
Unknown3/Drosophila-Promoters/Homer	ACVAKCTGGCAGCGC	1e0	0.000e+00	1.0000	0.0	0.00%	0.9	0.06%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	0.000e+00	1.0000	0.0	0.00%	3.6	0.24%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	0.000e+00	1.0000	0.0	0.00%	1.8	0.12%
EFL-1(E2F)/cElegans-L1-EFL1-ChIP-Seq(modEncode)/Homer	TGCAARYGCGCTCYA	1e0	0.000e+00	1.0000	0.0	0.00%	1.9	0.12%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	0.000e+00	1.0000	0.0	0.00%	4.3	0.28%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	0.000e+00	1.0000	0.0	0.00%	5.0	0.33%
FHY3(FAR1)/Arabidopsis-FHY3-ChIP-Seq(GSE30711)/Homer	HHCACGCGCBTN	1e0	0.000e+00	1.0000	0.0	0.00%	5.7	0.37%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	0.000e+00	1.0000	0.0	0.00%	5.2	0.33%