Information for 6-AGGCATRAGCCA (Motif 11)


Reverse Opposite:

p-value:1e-7
log p-value:-1.815e+01
Information Content per bp:1.809
Number of Target Sequences with motif39.0
Percentage of Target Sequences with motif4.95%
Number of Background Sequences with motif3.7
Percentage of Background Sequences with motif0.53%
Average Position of motif in Targets37.5 +/- 16.1bp
Average Position of motif in Background40.8 +/- 14.1bp
Strand Bias (log2 ratio + to - strand density)-1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

RHOXF1/MA0719.1/Jaspar

Match Rank:1
Score:0.65
Offset:4
Orientation:forward strand
Alignment:AGGCATRAGCCA
----ATAATCCC

MOT3/Literature(Harbison)/Yeast

Match Rank:2
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-AGGCATRAGCCA
NAGGCA-------

MOT3(MacIsaac)/Yeast

Match Rank:3
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-AGGCATRAGCCA
NAGGCA-------

MOT3/MA0340.1/Jaspar

Match Rank:4
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-AGGCATRAGCCA
AAGGCA-------

Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:5
Score:0.59
Offset:0
Orientation:forward strand
Alignment:AGGCATRAGCCA
ATGCATAATTCA

bcd/dmmpmm(Down)/fly

Match Rank:6
Score:0.59
Offset:4
Orientation:forward strand
Alignment:AGGCATRAGCCA
----TTAATCC-

dve/MA0915.1/Jaspar

Match Rank:7
Score:0.58
Offset:4
Orientation:forward strand
Alignment:AGGCATRAGCCA
----CTAATCCA

oc/MA0234.1/Jaspar

Match Rank:8
Score:0.58
Offset:5
Orientation:forward strand
Alignment:AGGCATRAGCCA
-----TAATCC-

Oc/dmmpmm(Noyes_hd)/fly

Match Rank:9
Score:0.58
Offset:2
Orientation:forward strand
Alignment:AGGCATRAGCCA
--NNTTAATCCN

bcd/MA0212.1/Jaspar

Match Rank:10
Score:0.57
Offset:5
Orientation:forward strand
Alignment:AGGCATRAGCCA
-----TAATCC-