Information for 1-CCTCYRCCTCCC (Motif 2)


Reverse Opposite:

p-value:1e-20
log p-value:-4.805e+01
Information Content per bp:1.591
Number of Target Sequences with motif144.0
Percentage of Target Sequences with motif18.27%
Number of Background Sequences with motif24.9
Percentage of Background Sequences with motif3.52%
Average Position of motif in Targets36.9 +/- 17.9bp
Average Position of motif in Background28.5 +/- 19.4bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.19
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

GCR2/MA0305.1/Jaspar

Match Rank:1
Score:0.69
Offset:5
Orientation:forward strand
Alignment:CCTCYRCCTCCC
-----GCTTCCT

GCR2(MacIsaac)/Yeast

Match Rank:2
Score:0.67
Offset:5
Orientation:forward strand
Alignment:CCTCYRCCTCCC
-----GCTTCCN

ZNF263/MA0528.1/Jaspar

Match Rank:3
Score:0.67
Offset:-7
Orientation:reverse strand
Alignment:-------CCTCYRCCTCCC--
TCCTCCTCCCCCTCCTCCTCC

ADR1/Literature(Harbison)/Yeast

Match Rank:4
Score:0.66
Offset:6
Orientation:reverse strand
Alignment:CCTCYRCCTCCC
------ACCCCN

ADR1(MacIsaac)/Yeast

Match Rank:5
Score:0.66
Offset:6
Orientation:reverse strand
Alignment:CCTCYRCCTCCC
------ACCCCN

SP1/MA0079.3/Jaspar

Match Rank:6
Score:0.64
Offset:3
Orientation:forward strand
Alignment:CCTCYRCCTCCC--
---GCCCCGCCCCC

ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:7
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:CCTCYRCCTCCC--
--KGCCCTTCCCCA

PB0202.1_Zfp410_2/Jaspar

Match Rank:8
Score:0.63
Offset:1
Orientation:forward strand
Alignment:CCTCYRCCTCCC------
-TCACCCCGCCCCAAATT

MZF1/MA0056.1/Jaspar

Match Rank:9
Score:0.63
Offset:8
Orientation:reverse strand
Alignment:CCTCYRCCTCCC--
--------TCCCCA

E2F6/MA0471.1/Jaspar

Match Rank:10
Score:0.63
Offset:5
Orientation:reverse strand
Alignment:CCTCYRCCTCCC----
-----NCTTCCCGCCC