Information for 5-WGGTGGCR (Motif 5)


Reverse Opposite:

p-value:1e-12
log p-value:-2.871e+01
Information Content per bp:1.834
Number of Target Sequences with motif74.0
Percentage of Target Sequences with motif9.39%
Number of Background Sequences with motif9.7
Percentage of Background Sequences with motif1.37%
Average Position of motif in Targets33.8 +/- 22.0bp
Average Position of motif in Background15.2 +/- 13.9bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

RPN4/MA0373.1/Jaspar

Match Rank:1
Score:0.90
Offset:1
Orientation:forward strand
Alignment:WGGTGGCR
-GGTGGCG

RPN4/RPN4_H2O2Lo/[](Harbison)/Yeast

Match Rank:2
Score:0.82
Offset:1
Orientation:reverse strand
Alignment:WGGTGGCR--
-GGTGGCAAA

MET31/MA0333.1/Jaspar

Match Rank:3
Score:0.79
Offset:-1
Orientation:forward strand
Alignment:-WGGTGGCR
AGTGTGGCG

MET32/MA0334.1/Jaspar

Match Rank:4
Score:0.77
Offset:1
Orientation:reverse strand
Alignment:WGGTGGCR
-TGTGGCG

RPN4(MacIsaac)/Yeast

Match Rank:5
Score:0.77
Offset:0
Orientation:forward strand
Alignment:WGGTGGCR---
CGGTGGCAAAA

schlank/MA0193.1/Jaspar

Match Rank:6
Score:0.75
Offset:-1
Orientation:reverse strand
Alignment:-WGGTGGCR
TTGGTAG--

CTCF/MA0531.1/Jaspar

Match Rank:7
Score:0.73
Offset:-5
Orientation:forward strand
Alignment:-----WGGTGGCR--
CCGCTAGATGGCGCC

ERF1B/MA0567.1/Jaspar

Match Rank:8
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:WGGTGGCR
TGGCGGCG

Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:9
Score:0.70
Offset:0
Orientation:forward strand
Alignment:WGGTGGCR
AGGTGTCA

Hic1/MA0739.1/Jaspar

Match Rank:10
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:WGGTGGCR-
GGTTGGCAT