Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 788)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 707)	% of Background Sequences with Motif
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e-5	-1.231e+01	0.0017	105.0	13.32%	45.5	6.44%
PABPC1(?)/MEL-PABC1-CLIP-Seq(GSE69755)/Homer	HAATAAAGNN	1e-5	-1.203e+01	0.0017	138.0	17.51%	68.7	9.72%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e-2	-6.522e+00	0.1898	71.0	9.01%	35.1	4.96%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e-2	-6.424e+00	0.1898	10.0	1.27%	0.9	0.12%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e-2	-6.077e+00	0.1898	116.0	14.72%	69.1	9.77%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e-2	-5.867e+00	0.1898	70.0	8.88%	37.0	5.23%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e-2	-5.600e+00	0.2044	56.0	7.11%	27.9	3.94%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e-2	-5.392e+00	0.2201	127.0	16.12%	80.5	11.40%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e-2	-5.240e+00	0.2280	11.0	1.40%	1.6	0.23%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-2	-4.962e+00	0.2707	17.0	2.16%	4.6	0.66%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e-2	-4.847e+00	0.2764	24.0	3.05%	8.7	1.22%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e-2	-4.674e+00	0.3011	10.0	1.27%	1.5	0.21%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e-1	-4.522e+00	0.3236	12.0	1.52%	2.4	0.35%
PHA-4(Forkhead)/cElegans-Embryos-PHA4-ChIP-Seq(modEncode)/Homer	KTGTTTGC	1e-1	-4.367e+00	0.3506	129.0	16.37%	86.5	12.24%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e-1	-4.297e+00	0.3512	29.0	3.68%	12.3	1.74%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e-1	-4.227e+00	0.3531	24.0	3.05%	9.5	1.35%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e-1	-4.216e+00	0.3531	55.0	6.98%	30.6	4.33%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e-1	-3.847e+00	0.4129	6.0	0.76%	0.0	0.00%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e-1	-3.847e+00	0.4129	6.0	0.76%	0.6	0.09%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e-1	-3.847e+00	0.4129	6.0	0.76%	1.0	0.14%
SeqBias: TA-repeat	TATATATATA	1e-1	-3.619e+00	0.4940	209.0	26.52%	156.0	22.08%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-1	-3.600e+00	0.4940	51.0	6.47%	29.9	4.22%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e-1	-3.566e+00	0.4940	8.0	1.02%	1.6	0.23%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-1	-3.504e+00	0.4940	28.0	3.55%	13.6	1.92%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e-1	-3.320e+00	0.5597	36.0	4.57%	19.3	2.74%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e-1	-3.211e+00	0.5999	27.0	3.43%	13.7	1.94%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e-1	-3.205e+00	0.5999	5.0	0.63%	0.4	0.05%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e-1	-3.205e+00	0.5999	5.0	0.63%	1.0	0.13%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)	NNAYTTCCTGHN	1e-1	-3.198e+00	0.5999	24.0	3.05%	11.1	1.57%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e-1	-3.119e+00	0.5999	11.0	1.40%	3.7	0.52%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-1	-3.102e+00	0.5999	58.0	7.36%	36.5	5.16%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e-1	-3.052e+00	0.5999	19.0	2.41%	8.9	1.26%
SeqBias: C/A-bias	MMMMMMMMMM	1e-1	-3.041e+00	0.5999	755.0	95.81%	662.9	93.80%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e-1	-3.036e+00	0.5999	39.0	4.95%	22.8	3.22%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e-1	-2.959e+00	0.5999	14.0	1.78%	5.5	0.77%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-1	-2.928e+00	0.5999	26.0	3.30%	13.7	1.93%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-1	-2.899e+00	0.5999	17.0	2.16%	7.4	1.04%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e-1	-2.878e+00	0.5999	49.0	6.22%	30.6	4.33%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e-1	-2.824e+00	0.5999	34.0	4.31%	19.5	2.75%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e-1	-2.815e+00	0.5999	50.0	6.35%	31.8	4.50%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e-1	-2.813e+00	0.5999	27.0	3.43%	14.8	2.09%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e-1	-2.745e+00	0.5999	15.0	1.90%	6.4	0.91%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e-1	-2.691e+00	0.6105	10.0	1.27%	3.7	0.53%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e-1	-2.589e+00	0.6602	13.0	1.65%	6.0	0.85%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e-1	-2.576e+00	0.6602	8.0	1.02%	2.6	0.37%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e-1	-2.576e+00	0.6602	8.0	1.02%	2.1	0.30%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e-1	-2.562e+00	0.6602	4.0	0.51%	0.7	0.10%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e-1	-2.562e+00	0.6602	4.0	0.51%	0.4	0.06%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e-1	-2.562e+00	0.6602	4.0	0.51%	1.0	0.14%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e-1	-2.562e+00	0.6602	4.0	0.51%	0.4	0.06%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e-1	-2.562e+00	0.6602	4.0	0.51%	0.0	0.00%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-1	-2.438e+00	0.6602	35.0	4.44%	21.4	3.03%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e-1	-2.403e+00	0.6605	14.0	1.78%	6.7	0.95%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-1	-2.394e+00	0.6605	24.0	3.05%	14.0	1.98%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-1	-2.385e+00	0.6605	40.0	5.08%	25.0	3.54%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e-1	-2.317e+00	0.6810	55.0	6.98%	37.2	5.27%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-2.270e+00	0.7016	211.0	26.78%	168.2	23.80%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e0	-2.144e+00	0.7688	23.0	2.92%	13.5	1.91%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e0	-2.144e+00	0.7688	23.0	2.92%	13.2	1.87%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-2.127e+00	0.7688	7.0	0.89%	2.5	0.35%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-2.127e+00	0.7688	7.0	0.89%	2.1	0.30%
Unknown4/Drosophila-Promoters/Homer	AAAAATACCRMA	1e0	-2.127e+00	0.7688	7.0	0.89%	2.6	0.36%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-2.127e+00	0.7688	7.0	0.89%	2.8	0.40%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e0	-2.118e+00	0.7688	16.0	2.03%	8.2	1.16%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e0	-2.107e+00	0.7688	36.0	4.57%	23.1	3.26%
PQM-1(?)/cElegans-L3-ChIP-Seq(modEncode)/Homer	ACTGATAAGA	1e0	-2.064e+00	0.7688	10.0	1.27%	4.7	0.67%
IBL1(bHLH)/Seedling-IBL1-ChIP-Seq(GSE51120)/Homer	CACGTGCC	1e0	-2.024e+00	0.7688	33.0	4.19%	21.4	3.03%
Unknown1/Arabidopsis-Promoters/Homer	RGGGTAWWWTHGTAA	1e0	-1.989e+00	0.7688	5.0	0.63%	1.7	0.24%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e0	-1.989e+00	0.7688	5.0	0.63%	1.8	0.26%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-1.985e+00	0.7688	21.0	2.66%	12.0	1.70%
TATA-box/Drosophila-Promoters/Homer	CTATAAAAGCSV	1e0	-1.921e+00	0.7688	3.0	0.38%	0.0	0.00%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e0	-1.921e+00	0.7688	3.0	0.38%	0.0	0.00%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-1.921e+00	0.7688	3.0	0.38%	0.5	0.08%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-1.921e+00	0.7688	3.0	0.38%	0.0	0.00%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-1.921e+00	0.7688	3.0	0.38%	0.0	0.00%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-1.921e+00	0.7688	3.0	0.38%	0.5	0.08%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-1.886e+00	0.7688	8.0	1.02%	3.6	0.51%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	-1.885e+00	0.7688	56.0	7.11%	40.2	5.68%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e0	-1.834e+00	0.7831	23.0	2.92%	14.7	2.09%
SUT1?/SacCer-Promoters/Homer	CCCCGCGC	1e0	-1.797e+00	0.8017	200.0	25.38%	163.6	23.15%
Unknown6/Drosophila-Promoters/Homer	AATTTTAAAA	1e0	-1.781e+00	0.8046	43.0	5.46%	30.3	4.28%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e0	-1.713e+00	0.8405	9.0	1.14%	4.0	0.57%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-1.713e+00	0.8405	9.0	1.14%	4.3	0.61%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-1.699e+00	0.8405	6.0	0.76%	2.4	0.34%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-1.699e+00	0.8405	6.0	0.76%	2.9	0.41%
caudal(Homeobox)/Drosophila-Embryos-ChIP-Chip(modEncode)/Homer	GGYCATAAAW	1e0	-1.691e+00	0.8405	35.0	4.44%	24.5	3.47%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e0	-1.661e+00	0.8453	13.0	1.65%	7.7	1.09%
KANADI1(Myb)/Seedling-KAN1-ChIP-Seq(GSE48081)/Homer	ARGAATAWWN	1e0	-1.653e+00	0.8453	58.0	7.36%	43.6	6.17%
Unknown2/Drosophila-Promoters/Homer	CATCMCTA	1e0	-1.624e+00	0.8572	42.0	5.33%	30.3	4.28%
SeqBias: G/A bias	RRRRRRRRRR	1e0	-1.603e+00	0.8653	771.0	97.84%	685.1	96.94%
RLR1?/SacCer-Promoters/Homer	WTTTTCYYTTTT	1e0	-1.562e+00	0.8922	23.0	2.92%	15.1	2.14%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-1.499e+00	0.9192	4.0	0.51%	1.7	0.24%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-1.499e+00	0.9192	4.0	0.51%	1.8	0.25%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e0	-1.499e+00	0.9192	4.0	0.51%	1.5	0.22%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-1.493e+00	0.9192	15.0	1.90%	9.8	1.39%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-1.425e+00	0.9692	16.0	2.03%	10.4	1.47%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e0	-1.415e+00	0.9694	43.0	5.46%	32.8	4.65%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e0	-1.398e+00	0.9758	32.0	4.06%	23.1	3.27%
GAGA-repeat/SacCer-Promoters/Homer	CTYTCTYTCTCTCTC	1e0	-1.384e+00	0.9793	134.0	17.01%	110.9	15.69%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e0	-1.380e+00	0.9793	27.0	3.43%	19.6	2.78%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e0	-1.380e+00	0.9793	27.0	3.43%	19.5	2.76%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e0	-1.324e+00	1.0000	23.0	2.92%	16.4	2.32%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e0	-1.321e+00	1.0000	13.0	1.65%	8.1	1.15%
SPCH(bHLH)/Seedling-SPCH-ChIP-Seq(GSE57497)/Homer	WNBCACGTGA	1e0	-1.307e+00	1.0000	29.0	3.68%	21.2	3.00%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e0	-1.305e+00	1.0000	41.0	5.20%	31.7	4.49%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e0	-1.296e+00	1.0000	5.0	0.63%	2.2	0.32%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-1.287e+00	1.0000	9.0	1.14%	5.6	0.79%
ABF1/SacCer-Promoters/Homer	CGTRNAAARTGA	1e0	-1.280e+00	1.0000	2.0	0.25%	0.0	0.00%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	-1.280e+00	1.0000	2.0	0.25%	0.0	0.00%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e0	-1.280e+00	1.0000	2.0	0.25%	0.0	0.00%
GAGA-repeat/Arabidopsis-Promoters/Homer	CTCTCTCTCY	1e0	-1.279e+00	1.0000	42.0	5.33%	32.3	4.57%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e0	-1.260e+00	1.0000	14.0	1.78%	9.4	1.33%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-1.203e+00	1.0000	52.0	6.60%	41.3	5.84%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e0	-1.187e+00	1.0000	33.0	4.19%	25.6	3.62%
TOD6?/SacCer-Promoters/Homer	GCGATGAGMT	1e0	-1.171e+00	1.0000	6.0	0.76%	3.2	0.45%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e0	-1.161e+00	1.0000	34.0	4.31%	26.5	3.76%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-1.160e+00	1.0000	16.0	2.03%	11.3	1.60%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e0	-1.152e+00	1.0000	28.0	3.55%	21.4	3.03%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-1.145e+00	1.0000	11.0	1.40%	7.1	1.00%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-1.145e+00	1.0000	11.0	1.40%	7.1	1.00%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e0	-1.082e+00	1.0000	7.0	0.89%	4.6	0.65%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-1.082e+00	1.0000	7.0	0.89%	4.8	0.68%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e0	-1.051e+00	1.0000	32.0	4.06%	25.8	3.65%
SeqBias: CG bias	SSSSSSSSSS	1e0	-1.038e+00	1.0000	339.0	43.02%	296.7	41.98%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-1.037e+00	1.0000	3.0	0.38%	1.5	0.21%
AARE(HLH)/mES-cMyc-ChIP-Seq/Homer	GATTGCATCA	1e0	-1.037e+00	1.0000	3.0	0.38%	1.1	0.16%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-1.037e+00	1.0000	3.0	0.38%	1.9	0.27%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-1.016e+00	1.0000	20.0	2.54%	15.3	2.17%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e0	-9.939e-01	1.0000	42.0	5.33%	34.1	4.83%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-9.845e-01	1.0000	28.0	3.55%	22.5	3.18%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e0	-9.619e-01	1.0000	9.0	1.14%	6.0	0.85%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-9.611e-01	1.0000	22.0	2.79%	17.7	2.50%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-9.380e-01	1.0000	16.0	2.03%	12.3	1.74%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-9.368e-01	1.0000	23.0	2.92%	18.2	2.58%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e0	-9.257e-01	1.0000	4.0	0.51%	2.2	0.31%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-9.257e-01	1.0000	4.0	0.51%	2.7	0.38%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-9.257e-01	1.0000	4.0	0.51%	2.4	0.34%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-9.257e-01	1.0000	4.0	0.51%	2.5	0.36%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e0	-9.257e-01	1.0000	4.0	0.51%	2.3	0.32%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-9.181e-01	1.0000	10.0	1.27%	8.0	1.13%
Unknown5/Drosophila-Promoters/Homer	GCTGATAASV	1e0	-9.181e-01	1.0000	10.0	1.27%	7.5	1.06%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e0	-9.142e-01	1.0000	24.0	3.05%	19.5	2.76%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e0	-9.094e-01	1.0000	17.0	2.16%	13.6	1.92%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-8.868e-01	1.0000	49.0	6.22%	42.0	5.94%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e0	-8.810e-01	1.0000	11.0	1.40%	8.6	1.21%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e0	-8.810e-01	1.0000	11.0	1.40%	8.2	1.16%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-8.568e-01	1.0000	5.0	0.63%	3.8	0.53%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-8.568e-01	1.0000	5.0	0.63%	3.5	0.50%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-8.568e-01	1.0000	5.0	0.63%	3.4	0.49%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-8.363e-01	1.0000	53.0	6.73%	45.6	6.45%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e0	-8.210e-01	1.0000	13.0	1.65%	10.5	1.48%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	-8.078e-01	1.0000	6.0	0.76%	4.3	0.61%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e0	-8.078e-01	1.0000	6.0	0.76%	4.3	0.60%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e0	-7.960e-01	1.0000	14.0	1.78%	11.7	1.65%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e0	-7.753e-01	1.0000	32.0	4.06%	27.6	3.90%
LIN-39(Homeobox)/cElegans.L3-LIN39-ChIP-Seq(modEncode)/Homer	ATGATTRATG	1e0	-7.709e-01	1.0000	59.0	7.49%	51.3	7.26%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e0	-7.701e-01	1.0000	7.0	0.89%	5.4	0.77%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-7.649e-01	1.0000	24.0	3.05%	20.5	2.90%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e0	-7.396e-01	1.0000	8.0	1.02%	6.6	0.93%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e0	-7.396e-01	1.0000	8.0	1.02%	6.0	0.85%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e0	-7.347e-01	1.0000	26.0	3.30%	22.2	3.14%
EGL-5(Homeobox)/cElegans-L3-EGL5-ChIP-Seq(modEncode)/Homer	ATTTAATGGG	1e0	-7.152e-01	1.0000	65.0	8.25%	57.7	8.16%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	-6.827e-01	1.0000	98.0	12.44%	87.3	12.35%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e0	-6.726e-01	1.0000	11.0	1.40%	9.8	1.39%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e0	-6.726e-01	1.0000	11.0	1.40%	9.8	1.39%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e0	-6.553e-01	1.0000	12.0	1.52%	10.3	1.45%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-6.397e-01	1.0000	1.0	0.13%	0.0	0.00%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e0	-6.397e-01	1.0000	1.0	0.13%	0.0	0.00%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e0	-6.397e-01	1.0000	1.0	0.13%	0.0	0.00%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	-6.397e-01	1.0000	1.0	0.13%	0.0	0.00%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-6.397e-01	1.0000	1.0	0.13%	0.0	0.00%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e0	-6.397e-01	1.0000	1.0	0.13%	0.0	0.00%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-6.397e-01	1.0000	1.0	0.13%	0.0	0.00%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-6.397e-01	1.0000	1.0	0.13%	0.6	0.08%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e0	-6.397e-01	1.0000	1.0	0.13%	0.0	0.00%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-6.397e-01	1.0000	1.0	0.13%	0.0	0.00%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-6.397e-01	1.0000	1.0	0.13%	0.0	0.00%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-6.397e-01	1.0000	1.0	0.13%	0.8	0.12%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-6.397e-01	1.0000	1.0	0.13%	0.5	0.07%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e0	-6.310e-01	1.0000	35.0	4.44%	31.3	4.44%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	-6.299e-01	1.0000	66.0	8.38%	59.8	8.46%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-6.255e-01	1.0000	14.0	1.78%	12.4	1.76%
ELT-3(Gata)/cElegans-L1-ELT3-ChIP-Seq(modEncode)/Homer	AWTGATAAGA	1e0	-6.255e-01	1.0000	14.0	1.78%	12.7	1.80%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e0	-6.255e-01	1.0000	14.0	1.78%	12.6	1.78%
LHY(Myb)/Seedling-LHY-ChIP-Seq(GSE52175)/Homer	ADAAATATCT	1e0	-6.176e-01	1.0000	47.0	5.96%	42.6	6.03%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-6.141e-01	1.0000	2.0	0.25%	1.6	0.23%
Tal1	CATCTG	1e0	-5.957e-01	1.0000	39.0	4.95%	35.7	5.05%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-5.953e-01	1.0000	3.0	0.38%	3.0	0.42%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e0	-5.953e-01	1.0000	3.0	0.38%	2.5	0.35%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-5.953e-01	1.0000	3.0	0.38%	2.1	0.30%
E-box/Drosophila-Promoters/Homer	AACAGCTGTTHN	1e0	-5.953e-01	1.0000	3.0	0.38%	2.5	0.35%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-5.951e-01	1.0000	28.0	3.55%	25.7	3.64%
SeqBias: A/T bias	WWWWWWWWWW	1e0	-5.950e-01	1.0000	550.0	69.80%	494.7	70.01%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-5.799e-01	1.0000	4.0	0.51%	3.1	0.44%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e0	-5.799e-01	1.0000	4.0	0.51%	3.9	0.56%
SFP1/SacCer-Promoters/Homer	DDAAAAATTTTY	1e0	-5.799e-01	1.0000	4.0	0.51%	3.2	0.45%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e0	-5.242e-01	1.0000	37.0	4.70%	34.6	4.89%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e0	-5.168e-01	1.0000	10.0	1.27%	9.6	1.35%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e0	-5.168e-01	1.0000	10.0	1.27%	9.5	1.34%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e0	-5.088e-01	1.0000	11.0	1.40%	10.4	1.47%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	-5.088e-01	1.0000	11.0	1.40%	10.6	1.50%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e0	-4.872e-01	1.0000	14.0	1.78%	13.1	1.85%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e0	-4.757e-01	1.0000	70.0	8.88%	65.8	9.31%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e0	-4.625e-01	1.0000	18.0	2.28%	17.8	2.52%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-4.361e-01	1.0000	23.0	2.92%	22.0	3.12%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	-4.361e-01	1.0000	23.0	2.92%	22.3	3.15%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-4.131e-01	1.0000	28.0	3.55%	27.2	3.85%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e0	-4.089e-01	1.0000	73.0	9.26%	69.8	9.87%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e0	-4.006e-01	1.0000	31.0	3.93%	30.7	4.34%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e0	-3.851e-01	1.0000	35.0	4.44%	34.5	4.88%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e0	-3.825e-01	1.0000	9.0	1.14%	9.4	1.33%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-3.825e-01	1.0000	9.0	1.14%	9.7	1.38%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e0	-3.821e-01	1.0000	10.0	1.27%	10.7	1.52%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-3.808e-01	1.0000	7.0	0.89%	7.9	1.12%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e0	-3.778e-01	1.0000	6.0	0.76%	6.8	0.96%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	-3.739e-01	1.0000	15.0	1.90%	15.9	2.25%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e0	-3.693e-01	1.0000	17.0	2.16%	17.7	2.50%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-3.693e-01	1.0000	17.0	2.16%	18.0	2.54%
Pho4(bHLH)/Yeast-Pho4-ChIP-Seq(GSE29506)/Homer	AAGCACGTGBGD	1e0	-3.633e-01	1.0000	4.0	0.51%	4.4	0.62%
PCF/Arabidopsis-Promoters/Homer	NNWWWTGGGCYTDDN	1e0	-3.633e-01	1.0000	4.0	0.51%	4.5	0.63%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e0	-3.633e-01	1.0000	4.0	0.51%	4.5	0.64%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e0	-3.633e-01	1.0000	4.0	0.51%	4.4	0.63%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-3.618e-01	1.0000	20.0	2.54%	20.8	2.94%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e0	-3.513e-01	1.0000	24.0	3.05%	24.2	3.42%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-3.473e-01	1.0000	3.0	0.38%	3.2	0.45%
RBFox2(?)/Heart-RBFox2-CLIP-Seq(GSE57926)/Homer	TGCATGCA	1e0	-3.460e-01	1.0000	63.0	7.99%	62.0	8.77%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-3.449e-01	1.0000	47.0	5.96%	46.6	6.59%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-3.255e-01	1.0000	34.0	4.31%	34.4	4.87%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-3.178e-01	1.0000	2.0	0.25%	3.0	0.42%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e0	-3.178e-01	1.0000	2.0	0.25%	2.9	0.42%
Unknown3/Arabidopsis-Promoters/Homer	AYTAAACCGG	1e0	-3.178e-01	1.0000	2.0	0.25%	2.9	0.41%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-3.178e-01	1.0000	2.0	0.25%	2.4	0.34%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e0	-3.178e-01	1.0000	2.0	0.25%	2.6	0.37%
Cbf1(bHLH)/Yeast-Cbf1-ChIP-Seq(GSE29506)/Homer	TCACGTGAYH	1e0	-3.178e-01	1.0000	2.0	0.25%	2.8	0.40%
CES-1(Homeobox)/cElegans-L1-CES1-ChIP-Seq(modEncode)/Homer	AAATTSAATTTN	1e0	-2.873e-01	1.0000	14.0	1.78%	15.8	2.23%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e0	-2.862e-01	1.0000	13.0	1.65%	14.9	2.10%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-2.860e-01	1.0000	22.0	2.79%	23.4	3.31%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-2.793e-01	1.0000	10.0	1.27%	12.0	1.70%
HLH-1(bHLH)/cElegans-Embryo-HLH1-ChIP-Seq(modEncode)/Homer	RACAGCTGTTBH	1e0	-2.754e-01	1.0000	9.0	1.14%	10.8	1.53%
Pho2(bHLH)/Yeast-Pho2-ChIP-Seq(GSE29506)/Homer	CCCACGTGCT	1e0	-2.702e-01	1.0000	8.0	1.02%	9.2	1.30%
SeqBias: GCW-triplet	GCWGCWGCWGCW	1e0	-2.693e-01	1.0000	747.0	94.80%	674.6	95.46%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e0	-2.679e-01	1.0000	36.0	4.57%	37.2	5.26%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-2.655e-01	1.0000	79.0	10.03%	78.5	11.11%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e0	-2.614e-01	1.0000	81.0	10.28%	80.2	11.34%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-2.544e-01	1.0000	6.0	0.76%	7.7	1.09%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-2.544e-01	1.0000	6.0	0.76%	7.1	1.01%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-2.525e-01	1.0000	1.0	0.13%	1.9	0.26%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-2.525e-01	1.0000	1.0	0.13%	1.2	0.18%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	-2.525e-01	1.0000	1.0	0.13%	1.5	0.22%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e0	-2.525e-01	1.0000	1.0	0.13%	1.2	0.17%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e0	-2.525e-01	1.0000	1.0	0.13%	1.1	0.16%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e0	-2.525e-01	1.0000	1.0	0.13%	1.3	0.19%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e0	-2.525e-01	1.0000	1.0	0.13%	1.1	0.15%
FHY3(FAR1)/Arabidopsis-FHY3-ChIP-Seq(GSE30711)/Homer	HHCACGCGCBTN	1e0	-2.525e-01	1.0000	1.0	0.13%	1.0	0.15%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-2.458e-01	1.0000	89.0	11.29%	88.7	12.56%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-2.423e-01	1.0000	5.0	0.63%	6.1	0.86%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	-2.280e-01	1.0000	24.0	3.05%	26.0	3.69%
Unknown4/Arabidopsis-Promoters/Homer	CKTCKTCTTY	1e0	-2.276e-01	1.0000	22.0	2.79%	24.5	3.47%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e0	-2.225e-01	1.0000	36.0	4.57%	38.5	5.45%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-2.027e-01	1.0000	3.0	0.38%	4.0	0.57%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e0	-2.027e-01	1.0000	3.0	0.38%	4.2	0.60%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e0	-1.958e-01	1.0000	9.0	1.14%	11.8	1.67%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	-1.910e-01	1.0000	66.0	8.38%	69.0	9.76%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e0	-1.836e-01	1.0000	36.0	4.57%	39.9	5.65%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e0	-1.815e-01	1.0000	24.0	3.05%	27.9	3.95%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e0	-1.798e-01	1.0000	7.0	0.89%	9.4	1.33%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	-1.798e-01	1.0000	7.0	0.89%	9.3	1.31%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-1.798e-01	1.0000	7.0	0.89%	9.9	1.40%
SeqBias: GA-repeat	GAGAGAGAGA	1e0	-1.740e-01	1.0000	240.0	30.46%	231.7	32.79%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e0	-1.712e-01	1.0000	17.0	2.16%	20.5	2.90%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-1.667e-01	1.0000	88.0	11.17%	90.3	12.78%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e0	-1.658e-01	1.0000	15.0	1.90%	18.0	2.55%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e0	-1.626e-01	1.0000	14.0	1.78%	17.6	2.49%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-1.557e-01	1.0000	5.0	0.63%	7.3	1.03%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e0	-1.507e-01	1.0000	39.0	4.95%	43.5	6.16%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-1.506e-01	1.0000	41.0	5.20%	45.6	6.46%
Zelda(Zf)/Embryo-zld-ChIP-Seq(GSE65441)/Homer	KBCTACCTGW	1e0	-1.496e-01	1.0000	11.0	1.40%	14.6	2.06%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-1.483e-01	1.0000	50.0	6.35%	54.1	7.65%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	-1.479e-01	1.0000	29.0	3.68%	33.3	4.72%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-1.472e-01	1.0000	28.0	3.55%	32.4	4.58%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e0	-1.439e-01	1.0000	10.0	1.27%	13.1	1.86%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e0	-1.439e-01	1.0000	10.0	1.27%	13.4	1.89%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-1.439e-01	1.0000	10.0	1.27%	13.9	1.97%
SeqBias: CA-repeat	CACACACACA	1e0	-1.419e-01	1.0000	162.0	20.56%	161.6	22.87%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e0	-1.332e-01	1.0000	102.0	12.94%	105.5	14.93%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-1.299e-01	1.0000	8.0	1.02%	11.9	1.68%
SOC1(MADS)/Seedling-SOC1-ChIP-Seq(GSE45846)/Homer	TWCCAWWTWTGG	1e0	-1.299e-01	1.0000	8.0	1.02%	11.2	1.59%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e0	-1.238e-01	1.0000	15.0	1.90%	19.0	2.69%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-1.190e-01	1.0000	30.0	3.81%	35.3	5.00%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e0	-1.174e-01	1.0000	3.0	0.38%	5.2	0.73%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e0	-1.174e-01	1.0000	3.0	0.38%	5.7	0.80%
PIF4(bHLH)/Seedling-PIF4-ChIP-Seq(GSE35315)/Homer	NNBCACGTGN	1e0	-1.172e-01	1.0000	28.0	3.55%	33.2	4.69%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-1.161e-01	1.0000	27.0	3.43%	32.5	4.60%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-1.119e-01	1.0000	12.0	1.52%	16.1	2.28%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e0	-1.113e-01	1.0000	1.0	0.13%	2.4	0.34%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-1.113e-01	1.0000	1.0	0.13%	2.4	0.34%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	-1.113e-01	1.0000	1.0	0.13%	2.7	0.38%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e0	-1.108e-01	1.0000	6.0	0.76%	9.7	1.38%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-1.108e-01	1.0000	6.0	0.76%	9.2	1.31%
E-box/Arabidopsis-Promoters/Homer	GCCACGTG	1e0	-1.108e-01	1.0000	6.0	0.76%	9.2	1.30%
SeqBias: polyC-repeat	CCCCCCCCCC	1e0	-1.033e-01	1.0000	643.0	81.60%	593.2	83.94%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e0	-1.015e-01	1.0000	41.0	5.20%	47.2	6.68%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-9.465e-02	1.0000	16.0	2.03%	21.9	3.10%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e0	-8.997e-02	1.0000	26.0	3.30%	32.6	4.62%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-8.914e-02	1.0000	2.0	0.25%	4.7	0.67%
Initiator/Drosophila-Promoters/Homer	NTCAGTYG	1e0	-8.544e-02	1.0000	51.0	6.47%	58.1	8.22%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-8.539e-02	1.0000	65.0	8.25%	72.6	10.28%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-8.037e-02	1.0000	7.0	0.89%	11.9	1.69%
TATA-box/SacCer-Promoters/Homer	BBHWTATATA	1e0	-7.253e-02	1.0000	17.0	2.16%	23.7	3.35%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e0	-6.681e-02	1.0000	15.0	1.90%	21.9	3.11%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e0	-6.020e-02	1.0000	13.0	1.65%	19.1	2.70%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e0	-5.908e-02	1.0000	8.0	1.02%	13.6	1.92%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-5.740e-02	1.0000	29.0	3.68%	38.0	5.37%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e0	-5.600e-02	1.0000	100.0	12.69%	109.6	15.51%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-5.092e-02	1.0000	1.0	0.13%	3.3	0.47%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-5.092e-02	1.0000	1.0	0.13%	3.3	0.47%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e0	-5.087e-02	1.0000	16.0	2.03%	23.7	3.35%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e0	-5.049e-02	1.0000	4.0	0.51%	8.7	1.23%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e0	-5.049e-02	1.0000	36.0	4.57%	45.5	6.43%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e0	-4.847e-02	1.0000	57.0	7.23%	67.2	9.50%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e0	-4.835e-02	1.0000	10.0	1.27%	16.1	2.28%
PIF5ox(bHLH)/Arabidopsis-PIF5ox-ChIP-Seq(GSE35062)/Homer	BCACGTGVDN	1e0	-4.801e-02	1.0000	22.0	2.79%	30.4	4.31%
DPL-1(E2F)/cElegans-Adult-ChIP-Seq(modEncode)/Homer	TAGCGCGC	1e0	-4.709e-02	1.0000	2.0	0.25%	5.2	0.73%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e0	-4.709e-02	1.0000	2.0	0.25%	5.1	0.72%
REB1/SacCer-Promoters/Homer	KCCGGGTAAYRR	1e0	-4.709e-02	1.0000	2.0	0.25%	5.9	0.84%
Dorsal(RHD)/Embryo-dl-ChIP-Seq(GSE65441)/Homer	GGGAAAAMCCCG	1e0	-4.709e-02	1.0000	2.0	0.25%	5.1	0.72%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-3.988e-02	1.0000	25.0	3.17%	34.3	4.86%
Oct6(POU,Homeobox)/NPC-Oct6-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e0	-3.902e-02	1.0000	8.0	1.02%	14.0	1.99%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e0	-3.275e-02	1.0000	10.0	1.27%	17.3	2.45%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e0	-3.214e-02	1.0000	14.0	1.78%	22.6	3.20%
SEP3(MADS)/Arabidoposis-Flower-Sep3-ChIP-Seq/Homer	CCAAAAAGGG	1e0	-3.112e-02	1.0000	26.0	3.30%	37.0	5.23%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e0	-2.980e-02	1.0000	4.0	0.51%	9.8	1.39%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e0	-2.619e-02	1.0000	16.0	2.03%	25.2	3.57%
SeqBias: CG-repeat	CGCGCGCGCG	1e0	-2.619e-02	1.0000	16.0	2.03%	25.1	3.55%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e0	-2.470e-02	1.0000	2.0	0.25%	6.1	0.87%
Unknown1(NR/Ini-like)/Drosophila-Promoters/Homer	MYGGTCACACTG	1e0	-2.470e-02	1.0000	2.0	0.25%	6.0	0.85%
DREF/Drosophila-Promoters/Homer	AVYTATCGATAD	1e0	-2.367e-02	1.0000	1.0	0.13%	4.6	0.65%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e0	-2.367e-02	1.0000	1.0	0.13%	5.0	0.70%
SeqBias: polyA-repeat	AAAAAAAAAA	1e0	-2.241e-02	1.0000	713.0	90.48%	658.7	93.21%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e0	-1.767e-02	1.0000	6.0	0.76%	13.6	1.92%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-1.285e-02	1.0000	2.0	0.25%	7.3	1.04%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-1.214e-02	1.0000	51.0	6.47%	68.0	9.62%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-1.107e-02	1.0000	1.0	0.13%	5.9	0.83%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e0	-8.397e-03	1.0000	7.0	0.89%	16.9	2.39%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e0	-6.503e-03	1.0000	6.0	0.76%	15.5	2.19%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e0	-6.477e-03	1.0000	139.0	17.64%	160.5	22.72%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e0	-1.863e-03	1.0000	7.0	0.89%	20.0	2.83%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-1.501e-03	1.0000	8.0	1.02%	21.7	3.08%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e0	-1.144e-03	1.0000	1.0	0.13%	8.1	1.14%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-8.710e-04	1.0000	2.0	0.25%	11.1	1.57%
Trl(Zf)/S2-GAGAfactor-ChIP-Seq(GSE40646)/Homer	RGAGAGAG	1e0	-4.230e-04	1.0000	39.0	4.95%	65.1	9.22%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-2.810e-04	1.0000	23.0	2.92%	46.2	6.54%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e0	-1.200e-05	1.0000	1.0	0.13%	14.9	2.11%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-0.000e+00	1.0000	0.0	0.00%	2.9	0.42%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	-0.000e+00	1.0000	0.0	0.00%	2.6	0.37%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-0.000e+00	1.0000	0.0	0.00%	2.6	0.37%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e0	-0.000e+00	1.0000	0.0	0.00%	2.8	0.40%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
 Ik-1	NHTTGGGAATRCC	1e0	0.000e+00	1.0000	788.0	100.00%	706.7	100.00%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
Unknown3/Drosophila-Promoters/Homer	ACVAKCTGGCAGCGC	1e0	0.000e+00	1.0000	0.0	0.00%	1.0	0.14%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e0	0.000e+00	1.0000	0.0	0.00%	0.5	0.07%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
Unknown2/Arabidopsis-Promoters/Homer	AAACGACGTCGTTTT	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
EFL-1(E2F)/cElegans-L1-EFL1-ChIP-Seq(modEncode)/Homer	TGCAARYGCGCTCYA	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
GEI-11(Myb?)/cElegans-L4-GEI11-ChIP-Seq(modEncode)/Homer	CCGACAYYTYACGGG	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
LIN-15B(Zf)/cElegans-L3-LIN15B-ChIP-Seq(modEncode)/Homer	CARTGGAGCGCRYTTGCATT	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	0.000e+00	1.0000	0.0	0.00%	0.5	0.08%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e0	0.000e+00	1.0000	0.0	0.00%	3.7	0.52%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e0	0.000e+00	1.0000	0.0	0.00%	1.6	0.23%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e0	0.000e+00	1.0000	0.0	0.00%	1.1	0.16%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	0.000e+00	1.0000	0.0	0.00%	4.3	0.61%