Information for 1-GCTGGGANWD (Motif 1)


Reverse Opposite:

p-value:1e-29
log p-value:-6.699e+01
Information Content per bp:1.612
Number of Target Sequences with motif360.0
Percentage of Target Sequences with motif24.71%
Number of Background Sequences with motif134.1
Percentage of Background Sequences with motif9.20%
Average Position of motif in Targets37.5 +/- 20.0bp
Average Position of motif in Background37.0 +/- 20.8bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:1
Score:0.80
Offset:0
Orientation:reverse strand
Alignment:GCTGGGANWD
CSTGGGAAAD

Su(H)/dmmpmm(Bergman)/fly

Match Rank:2
Score:0.80
Offset:1
Orientation:forward strand
Alignment:GCTGGGANWD
-ATGAGAA--

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:3
Score:0.79
Offset:-2
Orientation:forward strand
Alignment:--GCTGGGANWD
WDNCTGGGCA--

ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer

Match Rank:4
Score:0.76
Offset:-5
Orientation:reverse strand
Alignment:-----GCTGGGANWD
RGSMTBCTGGGAAAT

ACE2/MA0267.1/Jaspar

Match Rank:5
Score:0.75
Offset:-1
Orientation:reverse strand
Alignment:-GCTGGGANWD
TGCTGGT----

SWI5/Literature(Harbison)/Yeast

Match Rank:6
Score:0.72
Offset:-1
Orientation:forward strand
Alignment:-GCTGGGANWD
GGCTGA-----

SWI5/MA0402.1/Jaspar

Match Rank:7
Score:0.72
Offset:-1
Orientation:forward strand
Alignment:-GCTGGGANWD
TGCTGGTT---

YPR022C/MA0436.1/Jaspar

Match Rank:8
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:GCTGGGANWD
NGTGGGG---

PB0098.1_Zfp410_1/Jaspar

Match Rank:9
Score:0.70
Offset:-3
Orientation:forward strand
Alignment:---GCTGGGANWD----
TATTATGGGATGGATAA

POL009.1_DCE_S_II/Jaspar

Match Rank:10
Score:0.69
Offset:0
Orientation:forward strand
Alignment:GCTGGGANWD
GCTGTG----