Information for 18-ATATATATAT (Motif 17)


Reverse Opposite:

p-value:1e-6
log p-value:-1.574e+01
Information Content per bp:1.866
Number of Target Sequences with motif254.0
Percentage of Target Sequences with motif17.43%
Number of Background Sequences with motif157.4
Percentage of Background Sequences with motif10.80%
Average Position of motif in Targets37.0 +/- 19.0bp
Average Position of motif in Background37.0 +/- 21.4bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.26
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

SeqBias: TA-repeat

Match Rank:1
Score:0.89
Offset:-1
Orientation:forward strand
Alignment:-ATATATATAT
TATATATATA-

SPT15/MA0386.1/Jaspar

Match Rank:2
Score:0.85
Offset:-5
Orientation:reverse strand
Alignment:-----ATATATATAT------
NNNNAATATATATANCTANNN

Cf2/dmmpmm(Bergman)/fly

Match Rank:3
Score:0.84
Offset:0
Orientation:forward strand
Alignment:ATATATATAT
GTATATATA-

PB0080.1_Tbp_1/Jaspar

Match Rank:4
Score:0.83
Offset:-3
Orientation:forward strand
Alignment:---ATATATATAT---
TCTTTATATATAAATA

Cf2/MA0015.1/Jaspar

Match Rank:5
Score:0.83
Offset:0
Orientation:forward strand
Alignment:ATATATATAT
GTATATATAC

PB0198.1_Zfp128_2/Jaspar

Match Rank:6
Score:0.75
Offset:-3
Orientation:forward strand
Alignment:---ATATATATAT-
TGTATATATATACC

NHP6A/MA0345.1/Jaspar

Match Rank:7
Score:0.75
Offset:-4
Orientation:reverse strand
Alignment:----ATATATATAT-------
NNATNNTTATATATAGNNNAN

MOT2/MA0379.1/Jaspar

Match Rank:8
Score:0.74
Offset:0
Orientation:forward strand
Alignment:ATATATATAT
ATATA-----

TATA-box/SacCer-Promoters/Homer

Match Rank:9
Score:0.73
Offset:-3
Orientation:forward strand
Alignment:---ATATATATAT
BBHWTATATA---

TBP(- other)/several species/AthaMap

Match Rank:10
Score:0.73
Offset:-1
Orientation:reverse strand
Alignment:-ATATATATAT-
GGTATTTATAGN