Information for 3-TCGTGTCT (Motif 4)


Reverse Opposite:

p-value:1e-15
log p-value:-3.652e+01
Information Content per bp:1.608
Number of Target Sequences with motif247.0
Percentage of Target Sequences with motif16.95%
Number of Background Sequences with motif105.0
Percentage of Background Sequences with motif7.20%
Average Position of motif in Targets37.5 +/- 19.4bp
Average Position of motif in Background41.0 +/- 23.8bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

sma-4/MA0925.1/Jaspar

Match Rank:1
Score:0.74
Offset:1
Orientation:forward strand
Alignment:TCGTGTCT----
-AGTGTCTGGAC

PB0060.1_Smad3_1/Jaspar

Match Rank:2
Score:0.72
Offset:-2
Orientation:reverse strand
Alignment:--TCGTGTCT-------
NNTNNTGTCTGGNNTNG

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:3
Score:0.71
Offset:2
Orientation:forward strand
Alignment:TCGTGTCT--
--TWGTCTGV

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.71
Offset:2
Orientation:forward strand
Alignment:TCGTGTCT--
--CTGTCTGG

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.69
Offset:0
Orientation:forward strand
Alignment:TCGTGTCT--
VBSYGTCTGG

pros/dmmpmm(Bergman)/fly

Match Rank:6
Score:0.67
Offset:1
Orientation:forward strand
Alignment:TCGTGTCT
-CATGNCT

ARR11/MA0946.1/Jaspar

Match Rank:7
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:TCGTGTCT-
-CGTATCTT

Mecom/MA0029.1/Jaspar

Match Rank:8
Score:0.66
Offset:-5
Orientation:reverse strand
Alignment:-----TCGTGTCT-
TNTTATCTTATCTT

ARR18/MA0948.1/Jaspar

Match Rank:9
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-TCGTGTCT----
NNCGTATCTNNNN

ARG80/MA0271.1/Jaspar

Match Rank:10
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:TCGTGTCT
--GCGTCT