Information for 5-TTCTTGCTTT (Motif 6)


Reverse Opposite:

p-value:1e-13
log p-value:-3.021e+01
Information Content per bp:1.702
Number of Target Sequences with motif96.0
Percentage of Target Sequences with motif6.59%
Number of Background Sequences with motif20.7
Percentage of Background Sequences with motif1.42%
Average Position of motif in Targets37.0 +/- 17.7bp
Average Position of motif in Background43.5 +/- 15.7bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.01
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Dof2/MA0020.1/Jaspar

Match Rank:1
Score:0.67
Offset:4
Orientation:reverse strand
Alignment:TTCTTGCTTT
----NGCTTT

ONECUT3/MA0757.1/Jaspar

Match Rank:2
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-TTCTTGCTTT---
NTTATTGATTTTTT

DOF2(C2C2(Zn) Dof)/Zea mays/AthaMap

Match Rank:3
Score:0.66
Offset:3
Orientation:reverse strand
Alignment:TTCTTGCTTT----
---NNGCTTTANNN

SPT23/SPT23_YPD/[](Harbison)/Yeast

Match Rank:4
Score:0.66
Offset:3
Orientation:reverse strand
Alignment:TTCTTGCTTT-
---TTGATTTC

SPT23(MacIsaac)/Yeast

Match Rank:5
Score:0.66
Offset:3
Orientation:reverse strand
Alignment:TTCTTGCTTT-
---TTGATTTC

MNB1A/MA0053.1/Jaspar

Match Rank:6
Score:0.65
Offset:5
Orientation:reverse strand
Alignment:TTCTTGCTTT
-----GCTTT

SPT23/MA0388.1/Jaspar

Match Rank:7
Score:0.64
Offset:3
Orientation:reverse strand
Alignment:TTCTTGCTTT-
---TTGATTTC

tll/dmmpmm(Papatsenko)/fly

Match Rank:8
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:TTCTTGCTTT
-TNTNACTTT

PBF/MA0064.1/Jaspar

Match Rank:9
Score:0.64
Offset:5
Orientation:reverse strand
Alignment:TTCTTGCTTT
-----GCTTT

Foxd3/MA0041.1/Jaspar

Match Rank:10
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--TTCTTGCTTT
GAATGTTTGTTT