Information for 6-AAGTGATCCTCC (Motif 8)


Reverse Opposite:

p-value:1e-11
log p-value:-2.557e+01
Information Content per bp:1.717
Number of Target Sequences with motif75.0
Percentage of Target Sequences with motif5.15%
Number of Background Sequences with motif14.9
Percentage of Background Sequences with motif1.02%
Average Position of motif in Targets37.8 +/- 17.4bp
Average Position of motif in Background23.7 +/- 17.2bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer

Match Rank:1
Score:0.60
Offset:3
Orientation:forward strand
Alignment:AAGTGATCCTCC-
---CNGTCCTCCC

NKX2-3/MA0672.1/Jaspar

Match Rank:2
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---AAGTGATCCTCC
NTCAAGTGGN-----

NKX3-2/MA0122.2/Jaspar

Match Rank:3
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--AAGTGATCCTCC
TTAAGTGGN-----

Nkx3-1/MA0124.2/Jaspar

Match Rank:4
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--AAGTGATCCTCC
TTAAGTGGT-----

NTL9/MA1046.1/Jaspar

Match Rank:5
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--AAGTGATCCTCC
TTAAGTAAT-----

PH0162.1_Six2/Jaspar

Match Rank:6
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--AAGTGATCCTCC---
ANANGTGATACCCCATT

tin/dmmpmm(Bigfoot)/fly

Match Rank:7
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--AAGTGATCCTCC
TCAAGTG-------

ADR1/Literature(Harbison)/Yeast

Match Rank:8
Score:0.55
Offset:7
Orientation:reverse strand
Alignment:AAGTGATCCTCC-
-------ACCCCN

ADR1(MacIsaac)/Yeast

Match Rank:9
Score:0.55
Offset:7
Orientation:reverse strand
Alignment:AAGTGATCCTCC-
-------ACCCCN

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:10
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--AAGTGATCCTCC
TTAAGTGCTT----