Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 1457)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 1457)	% of Background Sequences with Motif
PABPC1(?)/MEL-PABC1-CLIP-Seq(GSE69755)/Homer	HAATAAAGNN	1e-6	-1.509e+01	0.0001	249.0	17.09%	155.0	10.64%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e-5	-1.277e+01	0.0006	97.0	6.66%	44.7	3.07%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-5	-1.173e+01	0.0010	101.0	6.93%	49.1	3.37%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e-5	-1.155e+01	0.0010	79.0	5.42%	34.3	2.35%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e-4	-1.022e+01	0.0028	18.0	1.24%	1.8	0.12%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-4	-9.499e+00	0.0048	115.0	7.89%	65.6	4.50%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e-4	-9.311e+00	0.0050	58.0	3.98%	24.3	1.67%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e-3	-7.799e+00	0.0198	19.0	1.30%	3.6	0.25%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e-3	-7.358e+00	0.0274	89.0	6.11%	51.9	3.56%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e-3	-7.235e+00	0.0279	22.0	1.51%	5.2	0.35%
SeqBias: TA-repeat	TATATATATA	1e-3	-7.044e+00	0.0307	415.0	28.48%	340.1	23.34%
PHA-4(Forkhead)/cElegans-Embryos-PHA4-ChIP-Seq(modEncode)/Homer	KTGTTTGC	1e-2	-6.259e+00	0.0617	250.0	17.16%	193.3	13.26%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e-2	-5.057e+00	0.1895	12.0	0.82%	2.5	0.17%
Unknown6/Drosophila-Promoters/Homer	AATTTTAAAA	1e-2	-4.995e+00	0.1895	88.0	6.04%	58.5	4.02%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e-2	-4.721e+00	0.2299	101.0	6.93%	70.3	4.82%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e-2	-4.674e+00	0.2299	29.0	1.99%	13.6	0.93%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e-1	-4.383e+00	0.2842	67.0	4.60%	43.2	2.97%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e-1	-4.300e+00	0.2842	53.0	3.64%	32.1	2.20%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e-1	-4.300e+00	0.2842	53.0	3.64%	32.9	2.26%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e-1	-4.191e+00	0.2927	71.0	4.87%	47.1	3.23%
Pho4(bHLH)/Yeast-Pho4-ChIP-Seq(GSE29506)/Homer	AAGCACGTGBGD	1e-1	-4.164e+00	0.2927	6.0	0.41%	0.0	0.00%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e-1	-4.116e+00	0.2927	56.0	3.84%	35.3	2.42%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-1	-4.054e+00	0.2927	12.0	0.82%	3.7	0.25%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)	NNAYTTCCTGHN	1e-1	-4.051e+00	0.2927	52.0	3.57%	32.5	2.23%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e-1	-3.984e+00	0.2927	76.0	5.22%	52.3	3.59%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e-1	-3.960e+00	0.2927	90.0	6.18%	64.5	4.43%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e-1	-3.895e+00	0.2927	15.0	1.03%	5.8	0.40%
TOD6?/SacCer-Promoters/Homer	GCGATGAGMT	1e-1	-3.722e+00	0.3229	13.0	0.89%	4.3	0.30%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e-1	-3.722e+00	0.3229	13.0	0.89%	4.2	0.29%
Unknown2/Drosophila-Promoters/Homer	CATCMCTA	1e-1	-3.656e+00	0.3334	72.0	4.94%	50.3	3.45%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-1	-3.646e+00	0.3334	30.0	2.06%	16.3	1.12%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e-1	-3.625e+00	0.3334	49.0	3.36%	31.7	2.17%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-1	-3.573e+00	0.3334	23.0	1.58%	11.8	0.81%
Unknown1/Arabidopsis-Promoters/Homer	RGGGTAWWWTHGTAA	1e-1	-3.562e+00	0.3334	11.0	0.75%	3.1	0.21%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e-1	-3.562e+00	0.3334	11.0	0.75%	4.0	0.27%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e-1	-3.542e+00	0.3334	106.0	7.28%	80.9	5.55%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e-1	-3.504e+00	0.3334	20.0	1.37%	9.3	0.64%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e-1	-3.469e+00	0.3334	5.0	0.34%	0.0	0.00%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e-1	-3.400e+00	0.3334	113.0	7.76%	87.4	6.00%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e-1	-3.383e+00	0.3334	33.0	2.26%	19.7	1.35%
SeqBias: CG bias	SSSSSSSSSS	1e-1	-3.340e+00	0.3346	511.0	35.07%	464.1	31.84%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e-1	-3.217e+00	0.3693	58.0	3.98%	40.2	2.76%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e-1	-3.184e+00	0.3727	31.0	2.13%	18.7	1.28%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e-1	-3.166e+00	0.3727	149.0	10.23%	121.9	8.36%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e-1	-3.084e+00	0.3937	10.0	0.69%	3.4	0.23%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-1	-3.080e+00	0.3937	43.0	2.95%	28.9	1.98%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e-1	-3.026e+00	0.3994	20.0	1.37%	10.4	0.71%
SUT1?/SacCer-Promoters/Homer	CCCCGCGC	1e-1	-3.016e+00	0.3994	316.0	21.69%	279.9	19.21%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e-1	-2.948e+00	0.4140	40.0	2.75%	26.3	1.80%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e-1	-2.935e+00	0.4140	17.0	1.17%	8.6	0.59%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e-1	-2.789e+00	0.4665	32.0	2.20%	20.3	1.39%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e-1	-2.775e+00	0.4665	4.0	0.27%	0.0	0.00%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e-1	-2.775e+00	0.4665	4.0	0.27%	0.7	0.05%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e-1	-2.775e+00	0.4665	4.0	0.27%	0.6	0.04%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e-1	-2.731e+00	0.4665	45.0	3.09%	31.9	2.19%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e-1	-2.716e+00	0.4665	15.0	1.03%	7.0	0.48%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e-1	-2.716e+00	0.4665	15.0	1.03%	7.7	0.53%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e-1	-2.597e+00	0.4969	30.0	2.06%	19.9	1.37%
SeqBias: G/A bias	RRRRRRRRRR	1e-1	-2.593e+00	0.4969	1422.0	97.60%	1408.7	96.65%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e-1	-2.351e+00	0.6148	77.0	5.28%	61.4	4.21%
IBL1(bHLH)/Seedling-IBL1-ChIP-Seq(GSE51120)/Homer	CACGTGCC	1e-1	-2.333e+00	0.6155	59.0	4.05%	45.1	3.10%
caudal(Homeobox)/Drosophila-Embryos-ChIP-Chip(modEncode)/Homer	GGYCATAAAW	1e0	-2.267e+00	0.6467	72.0	4.94%	57.2	3.92%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-2.262e+00	0.6467	15.0	1.03%	8.1	0.56%
Pho2(bHLH)/Yeast-Pho2-ChIP-Seq(GSE29506)/Homer	CCCACGTGCT	1e0	-2.259e+00	0.6467	11.0	0.75%	5.0	0.34%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	-2.240e+00	0.6467	109.0	7.48%	92.0	6.31%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e0	-2.218e+00	0.6467	47.0	3.23%	35.9	2.47%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-2.215e+00	0.6467	5.0	0.34%	1.1	0.08%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e0	-2.167e+00	0.6518	27.0	1.85%	18.4	1.26%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e0	-2.097e+00	0.6887	17.0	1.17%	10.4	0.72%
LHY(Myb)/Seedling-LHY-ChIP-Seq(GSE52175)/Homer	ADAAATATCT	1e0	-2.086e+00	0.6887	98.0	6.73%	82.2	5.64%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	-2.080e+00	0.6887	3.0	0.21%	0.5	0.04%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e0	-2.080e+00	0.6887	3.0	0.21%	0.0	0.00%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e0	-2.080e+00	0.6887	3.0	0.21%	0.0	0.00%
SPCH(bHLH)/Seedling-SPCH-ChIP-Seq(GSE57497)/Homer	WNBCACGTGA	1e0	-1.999e+00	0.7083	48.0	3.29%	37.0	2.54%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e0	-1.991e+00	0.7083	160.0	10.98%	141.6	9.72%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-1.948e+00	0.7257	99.0	6.79%	85.0	5.83%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-1.901e+00	0.7508	90.0	6.18%	76.0	5.22%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	-1.895e+00	0.7508	10.0	0.69%	6.0	0.41%
SFP1/SacCer-Promoters/Homer	DDAAAAATTTTY	1e0	-1.895e+00	0.7508	10.0	0.69%	5.2	0.36%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-1.839e+00	0.7692	29.0	1.99%	21.6	1.48%
SeqBias: CA-repeat	CACACACACA	1e0	-1.836e+00	0.7692	321.0	22.03%	298.0	20.45%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e0	-1.818e+00	0.7692	16.0	1.10%	10.3	0.71%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e0	-1.763e+00	0.7994	7.0	0.48%	3.7	0.25%
SeqBias: GA-repeat	GAGAGAGAGA	1e0	-1.732e+00	0.8148	453.0	31.09%	430.0	29.50%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-1.717e+00	0.8175	18.0	1.24%	12.9	0.89%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e0	-1.675e+00	0.8428	4.0	0.27%	1.1	0.08%
GAGA-repeat/Arabidopsis-Promoters/Homer	CTCTCTCTCY	1e0	-1.665e+00	0.8428	73.0	5.01%	62.5	4.29%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e0	-1.637e+00	0.8558	49.0	3.36%	40.1	2.75%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e0	-1.608e+00	0.8706	80.0	5.49%	69.7	4.79%
Unknown4/Arabidopsis-Promoters/Homer	CKTCKTCTTY	1e0	-1.556e+00	0.9071	43.0	2.95%	35.4	2.43%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e0	-1.555e+00	0.9071	15.0	1.03%	10.8	0.74%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e0	-1.555e+00	0.9071	15.0	1.03%	10.9	0.75%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e0	-1.543e+00	0.9071	44.0	3.02%	36.2	2.48%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-1.514e+00	0.9071	16.0	1.10%	11.3	0.77%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e0	-1.486e+00	0.9218	5.0	0.34%	2.5	0.17%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e0	-1.466e+00	0.9306	84.0	5.77%	74.2	5.09%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e0	-1.418e+00	0.9665	29.0	1.99%	23.6	1.62%
PIF4(bHLH)/Seedling-PIF4-ChIP-Seq(GSE35315)/Homer	NNBCACGTGN	1e0	-1.401e+00	0.9727	58.0	3.98%	51.0	3.50%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e0	-1.387e+00	0.9727	2.0	0.14%	0.0	0.00%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e0	-1.387e+00	0.9727	2.0	0.14%	0.5	0.04%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	-1.387e+00	0.9727	2.0	0.14%	0.9	0.06%
ABF1/SacCer-Promoters/Homer	CGTRNAAARTGA	1e0	-1.387e+00	0.9727	2.0	0.14%	0.0	0.00%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e0	-1.386e+00	0.9727	60.0	4.12%	52.2	3.58%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-1.372e+00	0.9727	6.0	0.41%	3.9	0.27%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-1.372e+00	0.9727	6.0	0.41%	3.1	0.21%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-1.372e+00	0.9727	6.0	0.41%	3.9	0.27%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e0	-1.369e+00	0.9727	21.0	1.44%	16.1	1.10%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-1.348e+00	0.9727	22.0	1.51%	17.2	1.18%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-1.311e+00	0.9727	24.0	1.65%	19.6	1.35%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e0	-1.289e+00	0.9727	39.0	2.68%	33.9	2.33%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e0	-1.281e+00	0.9727	15.0	1.03%	11.5	0.79%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	-1.262e+00	0.9784	42.0	2.88%	36.7	2.52%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-1.256e+00	0.9784	16.0	1.10%	13.0	0.89%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e0	-1.256e+00	0.9784	16.0	1.10%	12.5	0.85%
PIF5ox(bHLH)/Arabidopsis-PIF5ox-ChIP-Seq(GSE35062)/Homer	BCACGTGVDN	1e0	-1.245e+00	0.9784	44.0	3.02%	38.8	2.66%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-1.238e+00	0.9784	8.0	0.55%	5.0	0.35%
Cbf1(bHLH)/Yeast-Cbf1-ChIP-Seq(GSE29506)/Homer	TCACGTGAYH	1e0	-1.238e+00	0.9784	8.0	0.55%	5.3	0.36%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-1.238e+00	0.9784	8.0	0.55%	5.8	0.40%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-1.238e+00	0.9784	8.0	0.55%	5.2	0.36%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e0	-1.227e+00	0.9784	30.0	2.06%	25.0	1.72%
Unknown4/Drosophila-Promoters/Homer	AAAAATACCRMA	1e0	-1.195e+00	0.9784	19.0	1.30%	15.2	1.04%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e0	-1.195e+00	0.9784	19.0	1.30%	15.9	1.09%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e0	-1.164e+00	0.9784	3.0	0.21%	1.7	0.12%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	-1.164e+00	0.9784	3.0	0.21%	1.8	0.12%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e0	-1.153e+00	0.9784	38.0	2.61%	33.1	2.27%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e0	-1.150e+00	0.9784	22.0	1.51%	18.9	1.30%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e0	-1.137e+00	0.9784	23.0	1.58%	19.8	1.36%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e0	-1.137e+00	0.9784	23.0	1.58%	19.4	1.33%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-1.132e+00	0.9784	175.0	12.01%	166.4	11.42%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-1.129e+00	0.9784	11.0	0.75%	8.9	0.61%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	-1.129e+00	0.9784	11.0	0.75%	8.6	0.59%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	-1.103e+00	0.9784	46.0	3.16%	41.0	2.82%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e0	-1.098e+00	0.9784	74.0	5.08%	68.5	4.70%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e0	-1.093e+00	0.9784	48.0	3.29%	43.1	2.96%
LIN-39(Homeobox)/cElegans.L3-LIN39-ChIP-Seq(modEncode)/Homer	ATGATTRATG	1e0	-1.087e+00	0.9784	114.0	7.82%	107.5	7.38%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-1.084e+00	0.9784	13.0	0.89%	10.7	0.73%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e0	-1.075e+00	0.9784	52.0	3.57%	47.2	3.24%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e0	-1.068e+00	0.9784	4.0	0.27%	2.8	0.19%
SeqBias: C/A-bias	MMMMMMMMMM	1e0	-1.021e+00	1.0000	1394.0	95.68%	1389.9	95.36%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-1.013e+00	1.0000	5.0	0.34%	3.4	0.23%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-1.013e+00	1.0000	5.0	0.34%	3.4	0.23%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-1.013e+00	1.0000	5.0	0.34%	3.2	0.22%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-1.012e+00	1.0000	18.0	1.24%	15.3	1.05%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e0	-1.003e+00	1.0000	75.0	5.15%	70.4	4.83%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e0	-9.982e-01	1.0000	43.0	2.95%	39.9	2.74%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e0	-9.762e-01	1.0000	6.0	0.41%	4.3	0.30%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-9.625e-01	1.0000	365.0	25.05%	357.1	24.50%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-9.621e-01	1.0000	24.0	1.65%	21.6	1.48%
REB1/SacCer-Promoters/Homer	KCCGGGTAAYRR	1e0	-9.494e-01	1.0000	7.0	0.48%	5.7	0.39%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-9.124e-01	1.0000	9.0	0.62%	7.6	0.52%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-9.124e-01	1.0000	9.0	0.62%	7.5	0.51%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e0	-8.990e-01	1.0000	10.0	0.69%	8.9	0.61%
E-box/Arabidopsis-Promoters/Homer	GCCACGTG	1e0	-8.990e-01	1.0000	10.0	0.69%	8.2	0.56%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e0	-8.877e-01	1.0000	11.0	0.75%	10.0	0.69%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e0	-8.821e-01	1.0000	45.0	3.09%	42.2	2.89%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	-8.802e-01	1.0000	202.0	13.86%	197.1	13.52%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-8.697e-01	1.0000	13.0	0.89%	11.8	0.81%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e0	-8.498e-01	1.0000	64.0	4.39%	61.9	4.25%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-8.448e-01	1.0000	17.0	1.17%	15.1	1.04%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-8.281e-01	1.0000	21.0	1.44%	19.8	1.36%
GAGA-repeat/SacCer-Promoters/Homer	CTYTCTYTCTCTCTC	1e0	-8.150e-01	1.0000	266.0	18.26%	262.7	18.02%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e0	-7.990e-01	1.0000	33.0	2.26%	31.2	2.14%
ELT-3(Gata)/cElegans-L1-ELT3-ChIP-Seq(modEncode)/Homer	AWTGATAAGA	1e0	-7.990e-01	1.0000	33.0	2.26%	31.4	2.16%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-7.958e-01	1.0000	35.0	2.40%	33.9	2.33%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-7.803e-01	1.0000	48.0	3.29%	46.6	3.19%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e0	-7.785e-01	1.0000	50.0	3.43%	48.6	3.33%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e0	-7.646e-01	1.0000	71.0	4.87%	69.3	4.76%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e0	-7.623e-01	1.0000	76.0	5.22%	74.8	5.13%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	-6.931e-01	1.0000	2.0	0.14%	1.6	0.11%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-6.931e-01	1.0000	2.0	0.14%	1.5	0.10%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e0	-6.931e-01	1.0000	2.0	0.14%	1.1	0.08%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-6.931e-01	1.0000	1.0	0.07%	0.0	0.00%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-6.931e-01	1.0000	1.0	0.07%	0.0	0.00%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	-6.931e-01	1.0000	1.0	0.07%	0.0	0.00%
Unknown2/Arabidopsis-Promoters/Homer	AAACGACGTCGTTTT	1e0	-6.931e-01	1.0000	1.0	0.07%	0.0	0.00%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e0	-6.931e-01	1.0000	1.0	0.07%	0.4	0.03%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-6.931e-01	1.0000	1.0	0.07%	0.0	0.00%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e0	-6.931e-01	1.0000	1.0	0.07%	0.7	0.05%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-6.931e-01	1.0000	1.0	0.07%	0.0	0.00%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e0	-6.931e-01	1.0000	1.0	0.07%	0.4	0.03%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-6.931e-01	1.0000	1.0	0.07%	0.5	0.03%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e0	-6.931e-01	1.0000	1.0	0.07%	0.7	0.05%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e0	-6.931e-01	1.0000	1.0	0.07%	0.0	0.00%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e0	-6.931e-01	1.0000	51.0	3.50%	50.5	3.47%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-6.931e-01	1.0000	3.0	0.21%	2.1	0.15%
GEI-11(Myb?)/cElegans-L4-GEI11-ChIP-Seq(modEncode)/Homer	CCGACAYYTYACGGG	1e0	-6.931e-01	1.0000	3.0	0.21%	2.2	0.15%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e0	-6.931e-01	1.0000	4.0	0.27%	3.3	0.23%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-6.931e-01	1.0000	4.0	0.27%	3.0	0.21%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e0	-6.931e-01	1.0000	5.0	0.34%	4.9	0.33%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-6.931e-01	1.0000	5.0	0.34%	4.9	0.33%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-6.931e-01	1.0000	5.0	0.34%	4.8	0.33%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e0	-6.931e-01	1.0000	44.0	3.02%	43.7	3.00%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e0	-6.931e-01	1.0000	6.0	0.41%	6.0	0.41%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-6.931e-01	1.0000	41.0	2.81%	40.1	2.75%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-6.931e-01	1.0000	38.0	2.61%	37.0	2.54%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e0	-6.931e-01	1.0000	8.0	0.55%	7.8	0.53%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-6.931e-01	1.0000	8.0	0.55%	7.4	0.51%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e0	-6.931e-01	1.0000	32.0	2.20%	31.9	2.19%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e0	-6.931e-01	1.0000	11.0	0.75%	10.0	0.69%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e0	-6.931e-01	1.0000	13.0	0.89%	12.2	0.84%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-6.931e-01	1.0000	20.0	1.37%	19.0	1.31%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e0	-6.931e-01	1.0000	17.0	1.17%	16.9	1.16%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	-6.192e-01	1.0000	56.0	3.84%	56.0	3.85%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-6.138e-01	1.0000	48.0	3.29%	48.4	3.32%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e0	-5.872e-01	1.0000	109.0	7.48%	110.4	7.57%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e0	-5.859e-01	1.0000	25.0	1.72%	25.9	1.78%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e0	-5.769e-01	1.0000	21.0	1.44%	22.0	1.51%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e0	-5.714e-01	1.0000	19.0	1.30%	19.7	1.35%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-5.576e-01	1.0000	15.0	1.03%	15.9	1.09%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-5.485e-01	1.0000	13.0	0.89%	13.3	0.91%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-5.485e-01	1.0000	13.0	0.89%	13.2	0.91%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-5.485e-01	1.0000	13.0	0.89%	13.1	0.90%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-5.431e-01	1.0000	12.0	0.82%	12.2	0.84%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e0	-5.403e-01	1.0000	47.0	3.23%	48.7	3.34%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-5.397e-01	1.0000	110.0	7.55%	112.9	7.75%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-5.371e-01	1.0000	11.0	0.75%	11.2	0.77%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-5.371e-01	1.0000	11.0	0.75%	11.1	0.76%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e0	-5.359e-01	1.0000	44.0	3.02%	45.6	3.13%
SeqBias: polyC-repeat	CCCCCCCCCC	1e0	-5.311e-01	1.0000	1129.0	77.49%	1133.4	77.76%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e0	-5.303e-01	1.0000	10.0	0.69%	10.6	0.73%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-5.292e-01	1.0000	40.0	2.75%	41.7	2.86%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-5.194e-01	1.0000	35.0	2.40%	36.7	2.52%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	-5.048e-01	1.0000	29.0	1.99%	30.7	2.11%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-5.025e-01	1.0000	7.0	0.48%	7.6	0.52%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e0	-4.893e-01	1.0000	6.0	0.41%	6.6	0.45%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-4.728e-01	1.0000	5.0	0.34%	6.0	0.41%
AARE(HLH)/mES-cMyc-ChIP-Seq/Homer	GATTGCATCA	1e0	-4.728e-01	1.0000	5.0	0.34%	5.6	0.38%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-4.728e-01	1.0000	5.0	0.34%	5.3	0.36%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-4.728e-01	1.0000	5.0	0.34%	5.6	0.38%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-4.728e-01	1.0000	5.0	0.34%	5.0	0.34%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-4.728e-01	1.0000	5.0	0.34%	5.4	0.37%
EGL-5(Homeobox)/cElegans-L3-EGL5-ChIP-Seq(modEncode)/Homer	ATTTAATGGG	1e0	-4.727e-01	1.0000	138.0	9.47%	142.6	9.78%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e0	-4.630e-01	1.0000	18.0	1.24%	19.8	1.36%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-4.630e-01	1.0000	18.0	1.24%	19.9	1.36%
RBFox2(?)/Heart-RBFox2-CLIP-Seq(GSE57926)/Homer	TGCATGCA	1e0	-4.628e-01	1.0000	123.0	8.44%	127.4	8.74%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-4.620e-01	1.0000	41.0	2.81%	43.4	2.98%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e0	-4.306e-01	1.0000	13.0	0.89%	14.7	1.01%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-4.306e-01	1.0000	13.0	0.89%	14.4	0.99%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-4.222e-01	1.0000	12.0	0.82%	13.2	0.90%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-4.222e-01	1.0000	12.0	0.82%	13.9	0.95%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e0	-4.201e-01	1.0000	27.0	1.85%	29.9	2.05%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-4.128e-01	1.0000	11.0	0.75%	12.4	0.85%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e0	-4.128e-01	1.0000	11.0	0.75%	12.4	0.85%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e0	-4.118e-01	1.0000	25.0	1.72%	27.1	1.86%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-4.089e-01	1.0000	71.0	4.87%	75.5	5.18%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-4.023e-01	1.0000	10.0	0.69%	11.9	0.81%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e0	-3.905e-01	1.0000	9.0	0.62%	10.4	0.71%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-3.889e-01	1.0000	37.0	2.54%	40.1	2.75%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e0	-3.868e-01	1.0000	20.0	1.37%	22.3	1.53%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e0	-3.606e-01	1.0000	16.0	1.10%	18.6	1.28%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e0	-3.576e-01	1.0000	93.0	6.38%	99.1	6.80%
TATA-box/SacCer-Promoters/Homer	BBHWTATATA	1e0	-3.486e-01	1.0000	42.0	2.88%	46.5	3.19%
Zelda(Zf)/Embryo-zld-ChIP-Seq(GSE65441)/Homer	KBCTACCTGW	1e0	-3.263e-01	1.0000	22.0	1.51%	25.3	1.73%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e0	-3.202e-01	1.0000	5.0	0.34%	6.4	0.44%
Dorsal(RHD)/Embryo-dl-ChIP-Seq(GSE65441)/Homer	GGGAAAAMCCCG	1e0	-3.202e-01	1.0000	5.0	0.34%	6.4	0.44%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e0	-3.146e-01	1.0000	32.0	2.20%	36.5	2.50%
SeqBias: A/T bias	WWWWWWWWWW	1e0	-2.966e-01	1.0000	1105.0	75.84%	1119.4	76.80%
RLR1?/SacCer-Promoters/Homer	WTTTTCYYTTTT	1e0	-2.938e-01	1.0000	40.0	2.75%	45.1	3.09%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e0	-2.924e-01	1.0000	4.0	0.27%	5.8	0.40%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	-2.876e-01	1.0000	1.0	0.07%	1.1	0.08%
FHY3(FAR1)/Arabidopsis-FHY3-ChIP-Seq(GSE30711)/Homer	HHCACGCGCBTN	1e0	-2.876e-01	1.0000	1.0	0.07%	1.8	0.12%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e0	-2.876e-01	1.0000	1.0	0.07%	1.4	0.09%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e0	-2.876e-01	1.0000	1.0	0.07%	1.1	0.08%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-2.749e-01	1.0000	48.0	3.29%	54.9	3.76%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e0	-2.646e-01	1.0000	32.0	2.20%	37.2	2.55%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e0	-2.604e-01	1.0000	31.0	2.13%	36.4	2.50%
PQM-1(?)/cElegans-L3-ChIP-Seq(modEncode)/Homer	ACTGATAAGA	1e0	-2.599e-01	1.0000	21.0	1.44%	25.5	1.75%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-2.588e-01	1.0000	13.0	0.89%	16.6	1.14%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-2.565e-01	1.0000	3.0	0.21%	4.4	0.30%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e0	-2.470e-01	1.0000	28.0	1.92%	33.1	2.27%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e0	-2.409e-01	1.0000	80.0	5.49%	89.8	6.16%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-2.287e-01	1.0000	45.0	3.09%	52.1	3.57%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-2.245e-01	1.0000	16.0	1.10%	20.7	1.42%
KANADI1(Myb)/Seedling-KAN1-ChIP-Seq(GSE48081)/Homer	ARGAATAWWN	1e0	-2.239e-01	1.0000	105.0	7.21%	116.2	7.97%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	-2.154e-01	1.0000	22.0	1.51%	27.9	1.92%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e0	-1.958e-01	1.0000	35.0	2.40%	42.3	2.90%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	-1.948e-01	1.0000	161.0	11.05%	176.7	12.12%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e0	-1.881e-01	1.0000	4.0	0.27%	6.4	0.44%
Unknown1(NR/Ini-like)/Drosophila-Promoters/Homer	MYGGTCACACTG	1e0	-1.881e-01	1.0000	4.0	0.27%	6.1	0.42%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-1.808e-01	1.0000	7.0	0.48%	10.1	0.69%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-1.788e-01	1.0000	23.0	1.58%	29.7	2.04%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-1.741e-01	1.0000	85.0	5.83%	98.0	6.72%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-1.674e-01	1.0000	21.0	1.44%	27.2	1.87%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-1.628e-01	1.0000	6.0	0.41%	9.6	0.66%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-1.585e-01	1.0000	52.0	3.57%	62.1	4.26%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e0	-1.583e-01	1.0000	103.0	7.07%	117.7	8.07%
TATA-box/Drosophila-Promoters/Homer	CTATAAAAGCSV	1e0	-1.557e-01	1.0000	3.0	0.21%	5.2	0.36%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-1.512e-01	1.0000	49.0	3.36%	59.8	4.10%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	-1.422e-01	1.0000	55.0	3.77%	66.3	4.55%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e0	-1.407e-01	1.0000	12.0	0.82%	17.9	1.23%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e0	-1.355e-01	1.0000	62.0	4.26%	74.9	5.14%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-1.334e-01	1.0000	1.0	0.07%	2.4	0.16%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e0	-1.334e-01	1.0000	1.0	0.07%	2.8	0.20%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e0	-1.334e-01	1.0000	1.0	0.07%	2.3	0.16%
DREF/Drosophila-Promoters/Homer	AVYTATCGATAD	1e0	-1.334e-01	1.0000	1.0	0.07%	2.2	0.15%
Unknown5/Drosophila-Promoters/Homer	GCTGATAASV	1e0	-1.235e-01	1.0000	25.0	1.72%	33.7	2.31%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-1.197e-01	1.0000	4.0	0.27%	7.1	0.48%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-1.197e-01	1.0000	4.0	0.27%	7.7	0.53%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e0	-1.197e-01	1.0000	4.0	0.27%	7.7	0.53%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-1.156e-01	1.0000	2.0	0.14%	4.7	0.32%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-1.148e-01	1.0000	121.0	8.30%	139.9	9.60%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-1.099e-01	1.0000	9.0	0.62%	14.6	1.00%
Oct6(POU,Homeobox)/NPC-Oct6-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e0	-1.095e-01	1.0000	22.0	1.51%	30.9	2.12%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e0	-9.702e-02	1.0000	15.0	1.03%	22.5	1.54%
E-box/Drosophila-Promoters/Homer	AACAGCTGTTHN	1e0	-9.349e-02	1.0000	5.0	0.34%	9.4	0.64%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e0	-9.349e-02	1.0000	5.0	0.34%	9.5	0.65%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e0	-8.717e-02	1.0000	82.0	5.63%	99.5	6.83%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e0	-8.154e-02	1.0000	219.0	15.03%	246.3	16.90%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e0	-7.791e-02	1.0000	9.0	0.62%	15.7	1.08%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-7.535e-02	1.0000	4.0	0.27%	8.2	0.56%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e0	-7.121e-02	1.0000	28.0	1.92%	39.4	2.71%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-6.440e-02	1.0000	1.0	0.07%	3.1	0.21%
Unknown3/Arabidopsis-Promoters/Homer	AYTAAACCGG	1e0	-6.430e-02	1.0000	2.0	0.14%	5.3	0.36%
SeqBias: GCW-triplet	GCWGCWGCWGCW	1e0	-6.062e-02	1.0000	1370.0	94.03%	1388.7	95.28%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e0	-5.962e-02	1.0000	20.0	1.37%	30.5	2.09%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e0	-5.554e-02	1.0000	44.0	3.02%	59.2	4.06%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-5.409e-02	1.0000	32.0	2.20%	45.3	3.11%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-5.337e-02	1.0000	37.0	2.54%	51.8	3.55%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-5.252e-02	1.0000	106.0	7.28%	129.4	8.88%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e0	-4.879e-02	1.0000	6.0	0.41%	12.1	0.83%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-4.686e-02	1.0000	4.0	0.27%	9.7	0.66%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-4.670e-02	1.0000	39.0	2.68%	54.9	3.77%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	-4.378e-02	1.0000	103.0	7.07%	127.8	8.77%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e0	-4.281e-02	1.0000	23.0	1.58%	35.5	2.44%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-4.138e-02	1.0000	47.0	3.23%	64.6	4.43%
SeqBias: polyA-repeat	AAAAAAAAAA	1e0	-3.980e-02	1.0000	1355.0	93.00%	1377.5	94.51%
PCF/Arabidopsis-Promoters/Homer	NNWWWTGGGCYTDDN	1e0	-3.875e-02	1.0000	5.0	0.34%	11.2	0.77%
HLH-1(bHLH)/cElegans-Embryo-HLH1-ChIP-Seq(modEncode)/Homer	RACAGCTGTTBH	1e0	-3.729e-02	1.0000	21.0	1.44%	33.2	2.27%
Initiator/Drosophila-Promoters/Homer	NTCAGTYG	1e0	-3.318e-02	1.0000	113.0	7.76%	140.5	9.64%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-3.303e-02	1.0000	52.0	3.57%	71.5	4.91%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-3.300e-02	1.0000	3.0	0.21%	8.1	0.56%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	-3.268e-02	1.0000	112.0	7.69%	140.0	9.60%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e0	-2.933e-02	1.0000	15.0	1.03%	26.0	1.78%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-2.880e-02	1.0000	4.0	0.27%	10.2	0.70%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-2.781e-02	1.0000	151.0	10.36%	183.4	12.58%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e0	-2.679e-02	1.0000	77.0	5.28%	101.2	6.94%
SEP3(MADS)/Arabidoposis-Flower-Sep3-ChIP-Seq/Homer	CCAAAAAGGG	1e0	-2.642e-02	1.0000	57.0	3.91%	78.6	5.39%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e0	-2.591e-02	1.0000	9.0	0.62%	18.7	1.29%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-2.506e-02	1.0000	35.0	2.40%	52.8	3.62%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e0	-2.441e-02	1.0000	112.0	7.69%	141.2	9.69%
SeqBias: CG-repeat	CGCGCGCGCG	1e0	-2.314e-02	1.0000	22.0	1.51%	36.0	2.47%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e0	-2.060e-02	1.0000	45.0	3.09%	65.4	4.49%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-1.958e-02	1.0000	2.0	0.14%	7.5	0.52%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e0	-1.866e-02	1.0000	30.0	2.06%	47.5	3.26%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-1.714e-02	1.0000	7.0	0.48%	16.1	1.11%
SOC1(MADS)/Seedling-SOC1-ChIP-Seq(GSE45846)/Homer	TWCCAWWTWTGG	1e0	-1.634e-02	1.0000	13.0	0.89%	25.9	1.78%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e0	-1.593e-02	1.0000	140.0	9.61%	175.4	12.04%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e0	-1.581e-02	1.0000	18.0	1.24%	32.4	2.22%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-1.567e-02	1.0000	1.0	0.07%	5.5	0.38%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e0	-1.253e-02	1.0000	277.0	19.01%	325.4	22.33%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e0	-1.143e-02	1.0000	27.0	1.85%	45.6	3.13%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e0	-7.787e-03	1.0000	1.0	0.07%	6.4	0.44%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-6.388e-03	1.0000	3.0	0.21%	11.2	0.77%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e0	-5.295e-03	1.0000	25.0	1.72%	45.3	3.11%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e0	-5.129e-03	1.0000	45.0	3.09%	71.1	4.88%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e0	-3.450e-03	1.0000	68.0	4.67%	101.3	6.95%
CES-1(Homeobox)/cElegans-L1-CES1-ChIP-Seq(modEncode)/Homer	AAATTSAATTTN	1e0	-2.642e-03	1.0000	36.0	2.47%	62.5	4.29%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e0	-2.541e-03	1.0000	17.0	1.17%	36.2	2.49%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-1.845e-03	1.0000	99.0	6.79%	141.5	9.71%
DPL-1(E2F)/cElegans-Adult-ChIP-Seq(modEncode)/Homer	TAGCGCGC	1e0	-1.678e-03	1.0000	2.0	0.14%	12.0	0.82%
Tal1	CATCTG	1e0	-1.340e-03	1.0000	63.0	4.32%	99.9	6.85%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e0	-7.450e-04	1.0000	150.0	10.30%	205.4	14.09%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-4.190e-04	1.0000	47.0	3.23%	83.9	5.75%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e0	-2.750e-04	1.0000	168.0	11.53%	231.0	15.85%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-2.650e-04	1.0000	108.0	7.41%	161.7	11.10%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e0	-2.100e-05	1.0000	17.0	1.17%	48.7	3.34%
Trl(Zf)/S2-GAGAfactor-ChIP-Seq(GSE40646)/Homer	RGAGAGAG	1e0	-0.000e+00	1.0000	75.0	5.15%	143.9	9.87%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	-0.000e+00	1.0000	0.0	0.00%	2.8	0.19%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-0.000e+00	1.0000	0.0	0.00%	2.5	0.17%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
 Ik-1	NHTTGGGAATRCC	1e0	0.000e+00	1.0000	1457.0	100.00%	1457.5	100.00%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
Unknown3/Drosophila-Promoters/Homer	ACVAKCTGGCAGCGC	1e0	0.000e+00	1.0000	0.0	0.00%	0.6	0.04%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
LIN-15B(Zf)/cElegans-L3-LIN15B-ChIP-Seq(modEncode)/Homer	CARTGGAGCGCRYTTGCATT	1e0	0.000e+00	1.0000	0.0	0.00%	1.1	0.07%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e0	0.000e+00	1.0000	0.0	0.00%	1.9	0.13%
EFL-1(E2F)/cElegans-L1-EFL1-ChIP-Seq(modEncode)/Homer	TGCAARYGCGCTCYA	1e0	0.000e+00	1.0000	0.0	0.00%	1.6	0.11%