Information for 5-CATGGTGGCACA (Motif 11)


Reverse Opposite:

p-value:1e-7
log p-value:-1.760e+01
Information Content per bp:1.793
Number of Target Sequences with motif34.0
Percentage of Target Sequences with motif1.94%
Number of Background Sequences with motif3.2
Percentage of Background Sequences with motif0.17%
Average Position of motif in Targets35.9 +/- 18.9bp
Average Position of motif in Background31.6 +/- 14.0bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

RPN4/RPN4_H2O2Lo/[](Harbison)/Yeast

Match Rank:1
Score:0.69
Offset:3
Orientation:reverse strand
Alignment:CATGGTGGCACA
---GGTGGCAAA

RPN4/MA0373.1/Jaspar

Match Rank:2
Score:0.66
Offset:3
Orientation:forward strand
Alignment:CATGGTGGCACA
---GGTGGCG--

RPN4(MacIsaac)/Yeast

Match Rank:3
Score:0.65
Offset:2
Orientation:forward strand
Alignment:CATGGTGGCACA-
--CGGTGGCAAAA

ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer

Match Rank:4
Score:0.65
Offset:1
Orientation:forward strand
Alignment:CATGGTGGCACA----
-AAGGKGRCGCAGGCA

GCM1/MA0646.1/Jaspar

Match Rank:5
Score:0.64
Offset:0
Orientation:forward strand
Alignment:CATGGTGGCACA
CATGCGGGTAC-

schlank/MA0193.1/Jaspar

Match Rank:6
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:CATGGTGGCACA
-TTGGTAG----

PB0029.1_Hic1_1/Jaspar

Match Rank:7
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--CATGGTGGCACA--
NGTAGGTTGGCATNNN

PB0156.1_Plagl1_2/Jaspar

Match Rank:8
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-CATGGTGGCACA----
GCTGGGGGGTACCCCTT

gcm2/MA0917.1/Jaspar

Match Rank:9
Score:0.60
Offset:1
Orientation:forward strand
Alignment:CATGGTGGCACA
-ATGCGGGT---

MET31/MA0333.1/Jaspar

Match Rank:10
Score:0.60
Offset:1
Orientation:forward strand
Alignment:CATGGTGGCACA
-AGTGTGGCG--