Information for 1-HCYCHDTCTC (Motif 2)


Reverse Opposite:

p-value:1e-13
log p-value:-3.183e+01
Information Content per bp:1.533
Number of Target Sequences with motif133.0
Percentage of Target Sequences with motif7.57%
Number of Background Sequences with motif41.8
Percentage of Background Sequences with motif2.25%
Average Position of motif in Targets34.9 +/- 19.0bp
Average Position of motif in Background37.6 +/- 19.8bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

SeqBias: GA-repeat

Match Rank:1
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:HCYCHDTCTC
TCTCTCTCTC

Trl/dmmpmm(Down)/fly

Match Rank:2
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--HCYCHDTCTC
GCTCTCTCTCTC

eor-1/MA0543.1/Jaspar

Match Rank:3
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--HCYCHDTCTC---
TCTCTGCGTCTCTNN

SeqBias: G/A bias

Match Rank:4
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:HCYCHDTCTC-
-CCCCCCCCCC

Trl/dmmpmm(SeSiMCMC)/fly

Match Rank:5
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----HCYCHDTCTC
TTGCTCTCTCTCTC

GAGA-repeat/SacCer-Promoters/Homer

Match Rank:6
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---HCYCHDTCTC--
CTYTCTYTCTCTCTC

GATA3/MA0037.2/Jaspar

Match Rank:7
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:HCYCHDTCTC
-TCTTATCT-

blmp-1/MA0537.1/Jaspar

Match Rank:8
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-HCYCHDTCTC
TTTTCNCTTTT

ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:9
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:HCYCHDTCTC
GCTCGGSCTC

Gata1/MA0035.3/Jaspar

Match Rank:10
Score:0.55
Offset:0
Orientation:forward strand
Alignment:HCYCHDTCTC-
TTCTTATCTGT