Information for 1-AAAGCATT (Motif 3)


Reverse Opposite:

p-value:1e-10
log p-value:-2.450e+01
Information Content per bp:1.807
Number of Target Sequences with motif159.0
Percentage of Target Sequences with motif9.05%
Number of Background Sequences with motif69.6
Percentage of Background Sequences with motif3.75%
Average Position of motif in Targets37.0 +/- 18.7bp
Average Position of motif in Background32.4 +/- 18.8bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

YAP5(MacIsaac)/Yeast

Match Rank:1
Score:0.82
Offset:1
Orientation:forward strand
Alignment:AAAGCATT
-AAGCAT-

YAP5/MA0417.1/Jaspar

Match Rank:2
Score:0.81
Offset:1
Orientation:forward strand
Alignment:AAAGCATT
-AAGCAT-

Dof2/MA0020.1/Jaspar

Match Rank:3
Score:0.78
Offset:0
Orientation:forward strand
Alignment:AAAGCATT
AAAGCA--

MNB1A/MA0053.1/Jaspar

Match Rank:4
Score:0.75
Offset:0
Orientation:forward strand
Alignment:AAAGCATT
AAAGC---

PBF/MA0064.1/Jaspar

Match Rank:5
Score:0.75
Offset:0
Orientation:forward strand
Alignment:AAAGCATT
AAAGC---

Dof3/MA0021.1/Jaspar

Match Rank:6
Score:0.74
Offset:0
Orientation:forward strand
Alignment:AAAGCATT
AAAGCG--

DOF2(C2C2(Zn) Dof)/Zea mays/AthaMap

Match Rank:7
Score:0.72
Offset:-4
Orientation:forward strand
Alignment:----AAAGCATT
AAATAAAGCAA-

HAT1/MA1024.1/Jaspar

Match Rank:8
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-AAAGCATT-
CCAATCATTA

PHYPADRAFT_140773/MA0987.1/Jaspar

Match Rank:9
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---AAAGCATT
CAAAAAGTAA-

PHYPADRAFT_153324/MA0989.1/Jaspar

Match Rank:10
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---AAAGCATT
CAAAAAGTG--