Information for 2-YCCCADCMTT (Motif 4)


Reverse Opposite:

p-value:1e-9
log p-value:-2.196e+01
Information Content per bp:1.525
Number of Target Sequences with motif46.0
Percentage of Target Sequences with motif2.62%
Number of Background Sequences with motif5.9
Percentage of Background Sequences with motif0.32%
Average Position of motif in Targets34.8 +/- 18.1bp
Average Position of motif in Background42.1 +/- 19.8bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

ATHB-5/MA0110.2/Jaspar

Match Rank:1
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--YCCCADCMTT-
GGTCCAATTATTG

ATHB5(HD-ZIP)/Arabidopsis thaliana/AthaMap

Match Rank:2
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--YCCCADCMTT-
GGTCCAATTATTG

ATHB-12/MA0950.1/Jaspar

Match Rank:3
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:YCCCADCMTT
--CAATCATT

ATHB-7/MA0954.1/Jaspar

Match Rank:4
Score:0.61
Offset:1
Orientation:forward strand
Alignment:YCCCADCMTT-
-TCAATCATTG

ATHB1(HD-ZIP)/Arabidopsis thaliana/AthaMap

Match Rank:5
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:YCCCADCMTT-
--CAATAATTG

ADR1/MA0268.1/Jaspar

Match Rank:6
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-YCCCADCMTT
ACCCCAC----

HAHB4(HD-ZIP)/Helianthus anuus/AthaMap

Match Rank:7
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:YCCCADCMTT-
--CAATCATTA

Nr2e3/MA0164.1/Jaspar

Match Rank:8
Score:0.59
Offset:3
Orientation:forward strand
Alignment:YCCCADCMTT
---CAAGCTT

PB0098.1_Zfp410_1/Jaspar

Match Rank:9
Score:0.59
Offset:-7
Orientation:reverse strand
Alignment:-------YCCCADCMTT
NNNTCCATCCCATAANN

HAT5/MA0008.2/Jaspar

Match Rank:10
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:YCCCADCMTT---
-GCAATAATTGAA