Information for 4-CCAGCCTGGG (Motif 6)


Reverse Opposite:

p-value:1e-9
log p-value:-2.098e+01
Information Content per bp:1.690
Number of Target Sequences with motif75.0
Percentage of Target Sequences with motif4.27%
Number of Background Sequences with motif20.8
Percentage of Background Sequences with motif1.12%
Average Position of motif in Targets36.7 +/- 18.7bp
Average Position of motif in Background37.0 +/- 20.5bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.01
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer

Match Rank:1
Score:0.68
Offset:-4
Orientation:forward strand
Alignment:----CCAGCCTGGG-
GGGGCTYGKCTGGGA

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:2
Score:0.67
Offset:2
Orientation:forward strand
Alignment:CCAGCCTGGG--
--WDNCTGGGCA

YML081W(MacIsaac)/Yeast

Match Rank:3
Score:0.63
Offset:0
Orientation:forward strand
Alignment:CCAGCCTGGG
CCAGTCTGAA

ACE2/MA0267.1/Jaspar

Match Rank:4
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-CCAGCCTGGG
ACCAGCA----

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:5
Score:0.62
Offset:1
Orientation:forward strand
Alignment:CCAGCCTGGG
-TWGTCTGV-

SWI5/MA0402.1/Jaspar

Match Rank:6
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--CCAGCCTGGG
AACCAGCA----

SWI5/Literature(Harbison)/Yeast

Match Rank:7
Score:0.61
Offset:3
Orientation:forward strand
Alignment:CCAGCCTGGG
---GGCTGA-

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:8
Score:0.61
Offset:1
Orientation:forward strand
Alignment:CCAGCCTGGG
-CTGTCTGG-

SWI5(MacIsaac)/Yeast

Match Rank:9
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--CCAGCCTGGG
AACCAGCA----

POL009.1_DCE_S_II/Jaspar

Match Rank:10
Score:0.59
Offset:4
Orientation:forward strand
Alignment:CCAGCCTGGG
----GCTGTG