Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 1756)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 1853)	% of Background Sequences with Motif
IBL1(bHLH)/Seedling-IBL1-ChIP-Seq(GSE51120)/Homer	CACGTGCC	1e-2	-6.211e+00	0.7767	95.0	5.41%	63.0	3.40%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e-2	-5.930e+00	0.7767	13.0	0.74%	2.7	0.15%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e-2	-5.051e+00	0.8262	7.0	0.40%	0.7	0.04%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)	NNAYTTCCTGHN	1e-1	-4.206e+00	1.0000	49.0	2.79%	31.0	1.67%
caudal(Homeobox)/Drosophila-Embryos-ChIP-Chip(modEncode)/Homer	GGYCATAAAW	1e-1	-4.074e+00	1.0000	93.0	5.29%	70.2	3.78%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e-1	-4.058e+00	1.0000	26.0	1.48%	13.7	0.74%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e-1	-4.007e+00	1.0000	86.0	4.89%	64.3	3.46%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e-1	-3.765e+00	1.0000	17.0	0.97%	7.1	0.38%
Unknown6/Drosophila-Promoters/Homer	AATTTTAAAA	1e-1	-3.594e+00	1.0000	128.0	7.29%	105.7	5.70%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e-1	-3.566e+00	1.0000	58.0	3.30%	41.5	2.24%
SFP1/SacCer-Promoters/Homer	DDAAAAATTTTY	1e-1	-3.477e+00	1.0000	23.0	1.31%	12.7	0.68%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e-1	-3.466e+00	1.0000	71.0	4.04%	53.0	2.86%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e-1	-3.463e+00	1.0000	19.0	1.08%	9.5	0.51%
E-box/Arabidopsis-Promoters/Homer	GCCACGTG	1e-1	-3.360e+00	1.0000	16.0	0.91%	7.3	0.39%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e-1	-3.355e+00	1.0000	257.0	14.63%	232.9	12.56%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-1	-3.309e+00	1.0000	30.0	1.71%	18.8	1.01%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e-1	-3.237e+00	1.0000	21.0	1.20%	11.7	0.63%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e-1	-3.218e+00	1.0000	26.0	1.48%	15.3	0.82%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e-1	-3.194e+00	1.0000	87.0	4.95%	69.3	3.74%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e-1	-3.098e+00	1.0000	18.0	1.02%	9.9	0.53%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e-1	-3.089e+00	1.0000	8.0	0.46%	2.7	0.14%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e-1	-3.048e+00	1.0000	11.0	0.63%	5.0	0.27%
GAGA-repeat/SacCer-Promoters/Homer	CTYTCTYTCTCTCTC	1e-1	-3.009e+00	1.0000	378.0	21.51%	357.9	19.29%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-1	-2.954e+00	1.0000	45.0	2.56%	32.2	1.74%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e-1	-2.934e+00	1.0000	114.0	6.49%	96.8	5.22%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e-1	-2.887e+00	1.0000	69.0	3.93%	54.2	2.92%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e-1	-2.884e+00	1.0000	4.0	0.23%	1.0	0.05%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e-1	-2.884e+00	1.0000	4.0	0.23%	0.9	0.05%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e-1	-2.884e+00	1.0000	4.0	0.23%	1.0	0.05%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-1	-2.874e+00	1.0000	58.0	3.30%	44.5	2.40%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e-1	-2.868e+00	1.0000	156.0	8.88%	137.8	7.43%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e-1	-2.862e+00	1.0000	12.0	0.68%	5.5	0.29%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-1	-2.779e+00	1.0000	52.0	2.96%	39.2	2.12%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e-1	-2.776e+00	1.0000	116.0	6.60%	99.5	5.36%
Oct6(POU,Homeobox)/NPC-Oct6-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e-1	-2.719e+00	1.0000	36.0	2.05%	25.6	1.38%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e-1	-2.565e+00	1.0000	52.0	2.96%	40.5	2.18%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e-1	-2.460e+00	1.0000	36.0	2.05%	27.0	1.45%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-1	-2.427e+00	1.0000	79.0	4.50%	66.7	3.59%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e-1	-2.422e+00	1.0000	104.0	5.92%	90.5	4.88%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e-1	-2.378e+00	1.0000	66.0	3.76%	54.4	2.93%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-1	-2.359e+00	1.0000	68.0	3.87%	56.9	3.07%
SeqBias: GA-repeat	GAGAGAGAGA	1e-1	-2.358e+00	1.0000	566.0	32.21%	559.6	30.16%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e-1	-2.339e+00	1.0000	17.0	0.97%	10.7	0.58%
Pho4(bHLH)/Yeast-Pho4-ChIP-Seq(GSE29506)/Homer	AAGCACGTGBGD	1e-1	-2.339e+00	1.0000	8.0	0.46%	3.1	0.17%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-2.277e+00	1.0000	177.0	10.07%	163.4	8.81%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e0	-2.182e+00	1.0000	9.0	0.51%	4.1	0.22%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-2.174e+00	1.0000	20.0	1.14%	13.7	0.74%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e0	-2.163e+00	1.0000	3.0	0.17%	0.0	0.00%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e0	-2.163e+00	1.0000	3.0	0.17%	0.0	0.00%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e0	-2.163e+00	1.0000	3.0	0.17%	0.0	0.00%
ELT-3(Gata)/cElegans-L1-ELT3-ChIP-Seq(modEncode)/Homer	AWTGATAAGA	1e0	-2.153e+00	1.0000	54.0	3.07%	44.7	2.41%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e0	-2.124e+00	1.0000	119.0	6.77%	107.9	5.81%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-2.093e+00	1.0000	15.0	0.85%	9.1	0.49%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e0	-2.086e+00	1.0000	44.0	2.50%	35.2	1.90%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e0	-2.065e+00	1.0000	10.0	0.57%	5.5	0.29%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-2.065e+00	1.0000	10.0	0.57%	5.8	0.31%
PHA-4(Forkhead)/cElegans-Embryos-PHA4-ChIP-Seq(modEncode)/Homer	KTGTTTGC	1e0	-2.008e+00	1.0000	325.0	18.50%	316.0	17.04%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e0	-1.987e+00	1.0000	17.0	0.97%	11.9	0.64%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e0	-1.974e+00	1.0000	11.0	0.63%	6.8	0.37%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	-1.974e+00	1.0000	11.0	0.63%	6.7	0.36%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e0	-1.952e+00	1.0000	89.0	5.07%	79.1	4.27%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e0	-1.948e+00	1.0000	27.0	1.54%	20.4	1.10%
Unknown4/Drosophila-Promoters/Homer	AAAAATACCRMA	1e0	-1.944e+00	1.0000	18.0	1.02%	12.7	0.69%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e0	-1.944e+00	1.0000	40.0	2.28%	32.1	1.73%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e0	-1.909e+00	1.0000	43.0	2.45%	35.0	1.89%
LHY(Myb)/Seedling-LHY-ChIP-Seq(GSE52175)/Homer	ADAAATATCT	1e0	-1.906e+00	1.0000	114.0	6.49%	104.9	5.66%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e0	-1.901e+00	1.0000	12.0	0.68%	7.4	0.40%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e0	-1.898e+00	1.0000	44.0	2.50%	36.0	1.94%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e0	-1.895e+00	1.0000	130.0	7.40%	120.3	6.49%
SeqBias: CA-repeat	CACACACACA	1e0	-1.880e+00	1.0000	458.0	26.07%	455.5	24.55%
PIF4(bHLH)/Seedling-PIF4-ChIP-Seq(GSE35315)/Homer	NNBCACGTGN	1e0	-1.877e+00	1.0000	72.0	4.10%	63.7	3.43%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-1.862e+00	1.0000	48.0	2.73%	40.9	2.20%
SPCH(bHLH)/Seedling-SPCH-ChIP-Seq(GSE57497)/Homer	WNBCACGTGA	1e0	-1.819e+00	1.0000	54.0	3.07%	46.6	2.51%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-1.799e+00	1.0000	36.0	2.05%	29.7	1.60%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e0	-1.787e+00	1.0000	37.0	2.11%	30.2	1.63%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e0	-1.782e+00	1.0000	8.0	0.46%	4.3	0.23%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-1.749e+00	1.0000	15.0	0.85%	10.8	0.58%
SUT1?/SacCer-Promoters/Homer	CCCCGCGC	1e0	-1.702e+00	1.0000	302.0	17.19%	298.0	16.06%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-1.701e+00	1.0000	137.0	7.80%	130.0	7.00%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e0	-1.698e+00	1.0000	48.0	2.73%	41.6	2.24%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e0	-1.682e+00	1.0000	17.0	0.97%	12.2	0.66%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e0	-1.661e+00	1.0000	31.0	1.76%	25.8	1.39%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e0	-1.654e+00	1.0000	180.0	10.24%	173.2	9.34%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-1.635e+00	1.0000	10.0	0.57%	6.7	0.36%
GAGA-repeat/Arabidopsis-Promoters/Homer	CTCTCTCTCY	1e0	-1.618e+00	1.0000	71.0	4.04%	64.7	3.49%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e0	-1.616e+00	1.0000	143.0	8.14%	136.0	7.33%
SeqBias: TA-repeat	TATATATATA	1e0	-1.616e+00	1.0000	513.0	29.20%	517.5	27.89%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e0	-1.589e+00	1.0000	21.0	1.20%	16.6	0.90%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-1.586e+00	1.0000	5.0	0.28%	2.0	0.11%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-1.549e+00	1.0000	47.0	2.68%	41.3	2.23%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e0	-1.545e+00	1.0000	48.0	2.73%	42.6	2.29%
Zelda(Zf)/Embryo-zld-ChIP-Seq(GSE65441)/Homer	KBCTACCTGW	1e0	-1.529e+00	1.0000	25.0	1.42%	20.5	1.11%
SeqBias: CG bias	SSSSSSSSSS	1e0	-1.510e+00	1.0000	510.0	29.03%	516.8	27.86%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e0	-1.505e+00	1.0000	116.0	6.60%	110.8	5.97%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-1.481e+00	1.0000	14.0	0.80%	10.6	0.57%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-1.480e+00	1.0000	6.0	0.34%	3.1	0.16%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-1.457e+00	1.0000	15.0	0.85%	12.0	0.64%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e0	-1.442e+00	1.0000	2.0	0.11%	0.2	0.01%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e0	-1.442e+00	1.0000	2.0	0.11%	1.0	0.05%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-1.442e+00	1.0000	2.0	0.11%	0.0	0.00%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e0	-1.421e+00	1.0000	41.0	2.33%	36.2	1.95%
Unknown4/Arabidopsis-Promoters/Homer	CKTCKTCTTY	1e0	-1.390e+00	1.0000	57.0	3.24%	52.2	2.82%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-1.387e+00	1.0000	83.0	4.72%	78.0	4.21%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-1.321e+00	1.0000	9.0	0.51%	6.1	0.33%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e0	-1.319e+00	1.0000	27.0	1.54%	23.3	1.25%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-1.301e+00	1.0000	31.0	1.76%	27.3	1.47%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e0	-1.293e+00	1.0000	88.0	5.01%	84.6	4.56%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e0	-1.284e+00	1.0000	37.0	2.11%	33.7	1.81%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-1.270e+00	1.0000	50.0	2.85%	46.2	2.49%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	-1.248e+00	1.0000	12.0	0.68%	9.7	0.52%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e0	-1.248e+00	1.0000	12.0	0.68%	9.4	0.51%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e0	-1.233e+00	1.0000	13.0	0.74%	11.0	0.59%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-1.230e+00	1.0000	3.0	0.17%	1.2	0.06%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-1.230e+00	1.0000	3.0	0.17%	2.0	0.11%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e0	-1.208e+00	1.0000	15.0	0.85%	12.7	0.68%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-1.208e+00	1.0000	15.0	0.85%	12.5	0.68%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e0	-1.203e+00	1.0000	89.0	5.07%	86.7	4.67%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e0	-1.184e+00	1.0000	18.0	1.02%	15.9	0.86%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-1.181e+00	1.0000	75.0	4.27%	72.1	3.89%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-1.172e+00	1.0000	20.0	1.14%	17.8	0.96%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-1.172e+00	1.0000	20.0	1.14%	17.7	0.95%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e0	-1.168e+00	1.0000	21.0	1.20%	18.0	0.97%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	-1.165e+00	1.0000	150.0	8.54%	149.4	8.05%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e0	-1.157e+00	1.0000	57.0	3.24%	54.0	2.91%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e0	-1.144e+00	1.0000	4.0	0.23%	2.5	0.13%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-1.144e+00	1.0000	4.0	0.23%	2.5	0.13%
Tal1	CATCTG	1e0	-1.104e+00	1.0000	83.0	4.72%	81.8	4.41%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e0	-1.097e+00	1.0000	5.0	0.28%	3.8	0.20%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-1.097e+00	1.0000	5.0	0.28%	3.2	0.17%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e0	-1.079e+00	1.0000	70.0	3.98%	68.1	3.67%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-1.048e+00	1.0000	7.0	0.40%	5.6	0.30%
REB1/SacCer-Promoters/Homer	KCCGGGTAAYRR	1e0	-1.048e+00	1.0000	7.0	0.40%	5.1	0.27%
AARE(HLH)/mES-cMyc-ChIP-Seq/Homer	GATTGCATCA	1e0	-1.033e+00	1.0000	8.0	0.46%	6.9	0.37%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e0	-1.033e+00	1.0000	8.0	0.46%	6.6	0.36%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e0	-1.028e+00	1.0000	44.0	2.50%	42.5	2.29%
Pho2(bHLH)/Yeast-Pho2-ChIP-Seq(GSE29506)/Homer	CCCACGTGCT	1e0	-1.023e+00	1.0000	9.0	0.51%	7.3	0.40%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e0	-1.023e+00	1.0000	9.0	0.51%	7.7	0.41%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-1.015e+00	1.0000	37.0	2.11%	35.9	1.93%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e0	-1.015e+00	1.0000	37.0	2.11%	35.4	1.91%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-1.015e+00	1.0000	10.0	0.57%	8.5	0.46%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e0	-1.009e+00	1.0000	11.0	0.63%	9.8	0.53%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-1.009e+00	1.0000	11.0	0.63%	9.6	0.52%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e0	-1.004e+00	1.0000	30.0	1.71%	28.8	1.55%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-1.000e+00	1.0000	27.0	1.54%	25.2	1.36%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-9.960e-01	1.0000	23.0	1.31%	22.0	1.18%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e0	-9.949e-01	1.0000	17.0	0.97%	16.0	0.86%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e0	-9.943e-01	1.0000	19.0	1.08%	17.6	0.95%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e0	-9.866e-01	1.0000	69.0	3.93%	68.1	3.67%
Unknown5/Drosophila-Promoters/Homer	GCTGATAASV	1e0	-9.079e-01	1.0000	40.0	2.28%	39.1	2.11%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-8.935e-01	1.0000	66.0	3.76%	66.1	3.57%
RLR1?/SacCer-Promoters/Homer	WTTTTCYYTTTT	1e0	-8.869e-01	1.0000	90.0	5.12%	91.5	4.93%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-8.752e-01	1.0000	60.0	3.41%	60.0	3.23%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	-8.639e-01	1.0000	82.0	4.67%	83.1	4.48%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e0	-8.434e-01	1.0000	21.0	1.20%	20.8	1.12%
PIF5ox(bHLH)/Arabidopsis-PIF5ox-ChIP-Seq(GSE35062)/Homer	BCACGTGVDN	1e0	-8.388e-01	1.0000	49.0	2.79%	49.2	2.65%
SeqBias: polyC-repeat	CCCCCCCCCC	1e0	-8.297e-01	1.0000	1315.0	74.84%	1383.4	74.57%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e0	-8.228e-01	1.0000	16.0	0.91%	15.8	0.85%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-8.228e-01	1.0000	16.0	0.91%	15.0	0.81%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-8.183e-01	1.0000	15.0	0.85%	14.6	0.79%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-8.137e-01	1.0000	14.0	0.80%	13.7	0.74%
Cbf1(bHLH)/Yeast-Cbf1-ChIP-Seq(GSE29506)/Homer	TCACGTGAYH	1e0	-8.090e-01	1.0000	13.0	0.74%	12.2	0.66%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e0	-7.990e-01	1.0000	11.0	0.63%	10.5	0.57%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-7.990e-01	1.0000	11.0	0.63%	10.8	0.58%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-7.873e-01	1.0000	80.0	4.55%	82.9	4.47%
Unknown3/Arabidopsis-Promoters/Homer	AYTAAACCGG	1e0	-7.823e-01	1.0000	8.0	0.46%	7.4	0.40%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	-7.694e-01	1.0000	6.0	0.34%	5.5	0.30%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	-7.693e-01	1.0000	232.0	13.20%	242.5	13.07%
Unknown1(NR/Ini-like)/Drosophila-Promoters/Homer	MYGGTCACACTG	1e0	-7.623e-01	1.0000	5.0	0.28%	4.8	0.26%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-7.543e-01	1.0000	4.0	0.23%	3.9	0.21%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-7.543e-01	1.0000	4.0	0.23%	3.5	0.19%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e0	-7.543e-01	1.0000	4.0	0.23%	3.5	0.19%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-7.454e-01	1.0000	3.0	0.17%	2.0	0.11%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e0	-7.347e-01	1.0000	2.0	0.11%	1.5	0.08%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e0	-7.347e-01	1.0000	2.0	0.11%	1.4	0.08%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e0	-7.347e-01	1.0000	2.0	0.11%	1.3	0.07%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	-7.207e-01	1.0000	1.0	0.06%	0.0	0.00%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e0	-7.207e-01	1.0000	1.0	0.06%	0.0	0.00%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	-7.207e-01	1.0000	1.0	0.06%	0.0	0.00%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	-7.165e-01	1.0000	41.0	2.33%	42.1	2.27%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-7.165e-01	1.0000	41.0	2.33%	42.4	2.28%
PABPC1(?)/MEL-PABC1-CLIP-Seq(GSE69755)/Homer	HAATAAAGNN	1e0	-6.903e-01	1.0000	250.0	14.23%	263.8	14.22%
SeqBias: C/A-bias	MMMMMMMMMM	1e0	-6.898e-01	1.0000	1685.0	95.90%	1778.3	95.86%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e0	-6.707e-01	1.0000	32.0	1.82%	33.4	1.80%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e0	-6.677e-01	1.0000	15.0	0.85%	15.6	0.84%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-6.588e-01	1.0000	14.0	0.80%	14.6	0.79%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-6.379e-01	1.0000	174.0	9.90%	184.5	9.95%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-6.201e-01	1.0000	24.0	1.37%	25.3	1.37%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-6.164e-01	1.0000	215.0	12.24%	228.6	12.32%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-6.032e-01	1.0000	9.0	0.51%	9.9	0.53%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-5.974e-01	1.0000	21.0	1.20%	22.4	1.21%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e0	-5.891e-01	1.0000	20.0	1.14%	21.2	1.14%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-5.831e-01	1.0000	216.0	12.29%	230.8	12.44%
RBFox2(?)/Heart-RBFox2-CLIP-Seq(GSE57926)/Homer	TGCATGCA	1e0	-5.825e-01	1.0000	136.0	7.74%	145.3	7.83%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e0	-5.805e-01	1.0000	19.0	1.08%	20.7	1.12%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-5.748e-01	1.0000	31.0	1.76%	33.1	1.79%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-5.716e-01	1.0000	7.0	0.40%	7.6	0.41%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-5.716e-01	1.0000	7.0	0.40%	7.8	0.42%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-5.521e-01	1.0000	6.0	0.34%	6.3	0.34%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e0	-5.439e-01	1.0000	79.0	4.50%	85.7	4.62%
SeqBias: GCW-triplet	GCWGCWGCWGCW	1e0	-5.317e-01	1.0000	1644.0	93.57%	1738.2	93.69%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e0	-5.299e-01	1.0000	14.0	0.80%	15.4	0.83%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e0	-5.299e-01	1.0000	14.0	0.80%	15.7	0.84%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	-5.287e-01	1.0000	75.0	4.27%	81.6	4.40%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-5.287e-01	1.0000	5.0	0.28%	5.8	0.31%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e0	-5.210e-01	1.0000	35.0	1.99%	38.1	2.05%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e0	-5.076e-01	1.0000	22.0	1.25%	24.3	1.31%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-5.048e-01	1.0000	12.0	0.68%	13.6	0.73%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e0	-5.046e-01	1.0000	137.0	7.80%	148.0	7.98%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-5.017e-01	1.0000	108.0	6.15%	117.6	6.34%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e0	-5.015e-01	1.0000	32.0	1.82%	35.0	1.89%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e0	-4.996e-01	1.0000	4.0	0.23%	4.8	0.26%
Unknown1/Arabidopsis-Promoters/Homer	RGGGTAWWWTHGTAA	1e0	-4.996e-01	1.0000	4.0	0.23%	4.5	0.24%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-4.987e-01	1.0000	21.0	1.20%	23.0	1.24%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e0	-4.987e-01	1.0000	21.0	1.20%	23.2	1.25%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-4.752e-01	1.0000	10.0	0.57%	11.6	0.63%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e0	-4.696e-01	1.0000	18.0	1.02%	20.7	1.12%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e0	-4.643e-01	1.0000	48.0	2.73%	53.7	2.89%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e0	-4.610e-01	1.0000	233.0	13.26%	252.1	13.59%
TATA-box/SacCer-Promoters/Homer	BBHWTATATA	1e0	-4.589e-01	1.0000	70.0	3.98%	77.8	4.19%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e0	-4.510e-01	1.0000	35.0	1.99%	39.9	2.15%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-4.424e-01	1.0000	66.0	3.76%	73.1	3.94%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-4.365e-01	1.0000	88.0	5.01%	97.2	5.24%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-4.359e-01	1.0000	15.0	0.85%	17.3	0.93%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-4.341e-01	1.0000	53.0	3.02%	59.4	3.20%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e0	-4.257e-01	1.0000	316.0	17.99%	342.4	18.46%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e0	-4.233e-01	1.0000	14.0	0.80%	16.8	0.90%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-4.233e-01	1.0000	14.0	0.80%	16.4	0.88%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e0	-4.233e-01	1.0000	14.0	0.80%	16.0	0.86%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e0	-4.192e-01	1.0000	50.0	2.85%	56.1	3.03%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e0	-4.165e-01	1.0000	60.0	3.41%	67.2	3.62%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e0	-4.156e-01	1.0000	118.0	6.72%	130.5	7.03%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-4.093e-01	1.0000	29.0	1.65%	33.6	1.81%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-4.079e-01	1.0000	38.0	2.16%	43.4	2.34%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e0	-4.072e-01	1.0000	103.0	5.86%	114.6	6.18%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	-4.062e-01	1.0000	127.0	7.23%	140.4	7.57%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e0	-4.050e-01	1.0000	2.0	0.11%	2.3	0.12%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e0	-4.050e-01	1.0000	2.0	0.11%	2.7	0.15%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-4.050e-01	1.0000	2.0	0.11%	2.1	0.11%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e0	-4.050e-01	1.0000	2.0	0.11%	2.0	0.11%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e0	-4.017e-01	1.0000	28.0	1.59%	32.4	1.75%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e0	-4.017e-01	1.0000	28.0	1.59%	32.5	1.75%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-3.955e-01	1.0000	12.0	0.68%	14.1	0.76%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e0	-3.934e-01	1.0000	6.0	0.34%	7.3	0.40%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-3.934e-01	1.0000	6.0	0.34%	7.1	0.38%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-3.934e-01	1.0000	6.0	0.34%	7.5	0.40%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e0	-3.818e-01	1.0000	180.0	10.24%	198.6	10.71%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-3.763e-01	1.0000	42.0	2.39%	48.8	2.63%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-3.759e-01	1.0000	431.0	24.53%	467.6	25.20%
PCF/Arabidopsis-Promoters/Homer	NNWWWTGGGCYTDDN	1e0	-3.724e-01	1.0000	17.0	0.97%	20.1	1.09%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e0	-3.686e-01	1.0000	32.0	1.82%	37.8	2.04%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-3.686e-01	1.0000	32.0	1.82%	37.3	2.01%
SeqBias: polyA-repeat	AAAAAAAAAA	1e0	-3.652e-01	1.0000	1681.0	95.67%	1780.6	95.98%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-3.646e-01	1.0000	5.0	0.28%	6.2	0.34%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e0	-3.526e-01	1.0000	56.0	3.19%	64.9	3.50%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-3.512e-01	1.0000	130.0	7.40%	145.6	7.85%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e0	-3.486e-01	1.0000	46.0	2.62%	53.2	2.87%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e0	-3.465e-01	1.0000	37.0	2.11%	43.5	2.35%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e0	-3.453e-01	1.0000	392.0	22.31%	427.7	23.05%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-3.451e-01	1.0000	9.0	0.51%	11.0	0.60%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e0	-3.451e-01	1.0000	9.0	0.51%	11.7	0.63%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-3.415e-01	1.0000	63.0	3.59%	72.4	3.90%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e0	-3.342e-01	1.0000	91.0	5.18%	103.6	5.58%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-3.290e-01	1.0000	51.0	2.90%	59.3	3.19%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e0	-3.273e-01	1.0000	34.0	1.94%	40.4	2.18%
CES-1(Homeobox)/cElegans-L1-CES1-ChIP-Seq(modEncode)/Homer	AAATTSAATTTN	1e0	-3.244e-01	1.0000	59.0	3.36%	69.0	3.72%
LIN-39(Homeobox)/cElegans.L3-LIN39-ChIP-Seq(modEncode)/Homer	ATGATTRATG	1e0	-3.076e-01	1.0000	124.0	7.06%	140.2	7.56%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	-3.061e-01	1.0000	1.0	0.06%	1.3	0.07%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-3.061e-01	1.0000	1.0	0.06%	1.7	0.09%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-3.021e-01	1.0000	101.0	5.75%	115.9	6.25%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e0	-3.000e-01	1.0000	17.0	0.97%	21.8	1.18%
SeqBias: CG-repeat	CGCGCGCGCG	1e0	-2.886e-01	1.0000	16.0	0.91%	21.0	1.13%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-2.866e-01	1.0000	3.0	0.17%	4.2	0.23%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e0	-2.866e-01	1.0000	3.0	0.17%	4.8	0.26%
ABF1/SacCer-Promoters/Homer	CGTRNAAARTGA	1e0	-2.866e-01	1.0000	3.0	0.17%	4.2	0.23%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e0	-2.841e-01	1.0000	76.0	4.33%	88.5	4.77%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e0	-2.828e-01	1.0000	264.0	15.03%	293.5	15.82%
Initiator/Drosophila-Promoters/Homer	NTCAGTYG	1e0	-2.787e-01	1.0000	166.0	9.45%	187.5	10.10%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e0	-2.684e-01	1.0000	63.0	3.59%	74.2	4.00%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	-2.638e-01	1.0000	127.0	7.23%	145.8	7.86%
PQM-1(?)/cElegans-L3-ChIP-Seq(modEncode)/Homer	ACTGATAAGA	1e0	-2.592e-01	1.0000	31.0	1.76%	38.4	2.07%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e0	-2.575e-01	1.0000	9.0	0.51%	12.0	0.65%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e0	-2.539e-01	1.0000	94.0	5.35%	109.0	5.88%
SOC1(MADS)/Seedling-SOC1-ChIP-Seq(GSE45846)/Homer	TWCCAWWTWTGG	1e0	-2.455e-01	1.0000	23.0	1.31%	29.0	1.56%
E-box/Drosophila-Promoters/Homer	AACAGCTGTTHN	1e0	-2.383e-01	1.0000	8.0	0.46%	11.3	0.61%
Trl(Zf)/S2-GAGAfactor-ChIP-Seq(GSE40646)/Homer	RGAGAGAG	1e0	-2.301e-01	1.0000	152.0	8.65%	174.5	9.41%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-2.291e-01	1.0000	2.0	0.11%	3.3	0.18%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-2.291e-01	1.0000	2.0	0.11%	3.6	0.19%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-2.291e-01	1.0000	2.0	0.11%	3.3	0.18%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e0	-2.232e-01	1.0000	52.0	2.96%	63.5	3.42%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-2.223e-01	1.0000	11.0	0.63%	15.3	0.83%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e0	-2.098e-01	1.0000	132.0	7.51%	153.4	8.27%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e0	-2.063e-01	1.0000	121.0	6.89%	141.2	7.61%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e0	-2.060e-01	1.0000	14.0	0.80%	19.2	1.04%
TOD6?/SacCer-Promoters/Homer	GCGATGAGMT	1e0	-1.943e-01	1.0000	6.0	0.34%	9.6	0.52%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-1.903e-01	1.0000	9.0	0.51%	13.4	0.72%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e0	-1.847e-01	1.0000	21.0	1.20%	28.0	1.51%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-1.805e-01	1.0000	16.0	0.91%	22.0	1.19%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e0	-1.784e-01	1.0000	36.0	2.05%	46.3	2.50%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e0	-1.701e-01	1.0000	15.0	0.85%	21.4	1.15%
SeqBias: G/A bias	RRRRRRRRRR	1e0	-1.674e-01	1.0000	1711.0	97.38%	1815.6	97.87%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e0	-1.591e-01	1.0000	18.0	1.02%	25.9	1.39%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-1.543e-01	1.0000	7.0	0.40%	11.9	0.64%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e0	-1.502e-01	1.0000	60.0	3.41%	75.2	4.05%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-1.454e-01	1.0000	1.0	0.06%	3.0	0.16%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e0	-1.454e-01	1.0000	1.0	0.06%	2.5	0.14%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	-1.433e-01	1.0000	40.0	2.28%	52.2	2.81%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e0	-1.408e-01	1.0000	4.0	0.23%	7.3	0.39%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-1.406e-01	1.0000	45.0	2.56%	58.6	3.16%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e0	-1.393e-01	1.0000	9.0	0.51%	14.2	0.77%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	-1.372e-01	1.0000	56.0	3.19%	71.8	3.87%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-1.306e-01	1.0000	2.0	0.11%	5.0	0.27%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e0	-1.302e-01	1.0000	94.0	5.35%	115.5	6.23%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-1.282e-01	1.0000	108.0	6.15%	131.9	7.11%
DPL-1(E2F)/cElegans-Adult-ChIP-Seq(modEncode)/Homer	TAGCGCGC	1e0	-1.253e-01	1.0000	11.0	0.63%	17.7	0.95%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e0	-1.241e-01	1.0000	8.0	0.46%	13.4	0.72%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e0	-1.212e-01	1.0000	216.0	12.29%	252.2	13.59%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-1.182e-01	1.0000	56.0	3.19%	72.8	3.92%
EGL-5(Homeobox)/cElegans-L3-EGL5-ChIP-Seq(modEncode)/Homer	ATTTAATGGG	1e0	-1.174e-01	1.0000	158.0	8.99%	188.3	10.15%
Dorsal(RHD)/Embryo-dl-ChIP-Seq(GSE65441)/Homer	GGGAAAAMCCCG	1e0	-1.132e-01	1.0000	5.0	0.28%	9.1	0.49%
Unknown2/Drosophila-Promoters/Homer	CATCMCTA	1e0	-1.098e-01	1.0000	65.0	3.70%	83.5	4.50%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-1.083e-01	1.0000	168.0	9.56%	200.8	10.82%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	-1.076e-01	1.0000	47.0	2.68%	62.4	3.36%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e0	-1.075e-01	1.0000	104.0	5.92%	128.4	6.92%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-1.040e-01	1.0000	75.0	4.27%	95.6	5.15%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e0	-1.027e-01	1.0000	12.0	0.68%	19.7	1.06%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-9.111e-02	1.0000	17.0	0.97%	26.0	1.40%
TATA-box/Drosophila-Promoters/Homer	CTATAAAAGCSV	1e0	-9.065e-02	1.0000	4.0	0.23%	8.7	0.47%
SEP3(MADS)/Arabidoposis-Flower-Sep3-ChIP-Seq/Homer	CCAAAAAGGG	1e0	-7.563e-02	1.0000	98.0	5.58%	124.9	6.73%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-7.504e-02	1.0000	5.0	0.28%	10.0	0.54%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-7.440e-02	1.0000	2.0	0.11%	5.0	0.27%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e0	-7.440e-02	1.0000	2.0	0.11%	5.9	0.32%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	-7.198e-02	1.0000	1.0	0.06%	3.6	0.19%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	-7.198e-02	1.0000	1.0	0.06%	3.4	0.19%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e0	-7.128e-02	1.0000	24.0	1.37%	36.3	1.96%
SeqBias: A/T bias	WWWWWWWWWW	1e0	-6.844e-02	1.0000	1416.0	80.59%	1530.9	82.52%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	-6.681e-02	1.0000	3.0	0.17%	7.6	0.41%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-6.681e-02	1.0000	3.0	0.17%	7.1	0.38%
KANADI1(Myb)/Seedling-KAN1-ChIP-Seq(GSE48081)/Homer	ARGAATAWWN	1e0	-6.583e-02	1.0000	131.0	7.46%	163.7	8.82%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e0	-6.418e-02	1.0000	16.0	0.91%	26.2	1.41%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-6.223e-02	1.0000	6.0	0.34%	12.3	0.66%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e0	-6.148e-02	1.0000	37.0	2.11%	53.6	2.89%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e0	-6.068e-02	1.0000	41.0	2.33%	58.8	3.17%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-5.958e-02	1.0000	10.0	0.57%	18.5	1.00%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e0	-4.578e-02	1.0000	52.0	2.96%	73.9	3.98%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e0	-3.628e-02	1.0000	1.0	0.06%	4.4	0.24%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-2.922e-02	1.0000	146.0	8.31%	187.1	10.08%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e0	-2.800e-02	1.0000	81.0	4.61%	111.1	5.99%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-2.632e-02	1.0000	52.0	2.96%	76.3	4.11%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-2.414e-02	1.0000	32.0	1.82%	51.8	2.79%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-2.382e-02	1.0000	2.0	0.11%	8.0	0.43%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-2.080e-02	1.0000	30.0	1.71%	49.3	2.66%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e0	-1.934e-02	1.0000	75.0	4.27%	106.6	5.75%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e0	-1.782e-02	1.0000	13.0	0.74%	26.5	1.43%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e0	-1.721e-02	1.0000	9.0	0.51%	20.3	1.09%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e0	-1.482e-02	1.0000	45.0	2.56%	70.3	3.79%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-1.362e-02	1.0000	8.0	0.46%	19.7	1.06%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e0	-1.244e-02	1.0000	27.0	1.54%	47.8	2.58%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e0	-1.170e-02	1.0000	32.0	1.82%	54.4	2.93%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-1.036e-02	1.0000	7.0	0.40%	18.2	0.98%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-6.761e-03	1.0000	7.0	0.40%	19.8	1.07%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-5.109e-03	1.0000	12.0	0.68%	28.2	1.52%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e0	-3.370e-03	1.0000	19.0	1.08%	40.7	2.19%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-2.523e-03	1.0000	52.0	2.96%	87.2	4.70%
HLH-1(bHLH)/cElegans-Embryo-HLH1-ChIP-Seq(modEncode)/Homer	RACAGCTGTTBH	1e0	-2.418e-03	1.0000	19.0	1.08%	41.2	2.22%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	-1.111e-03	1.0000	145.0	8.25%	208.9	11.26%
Unknown3/Drosophila-Promoters/Homer	ACVAKCTGGCAGCGC	1e0	-0.000e+00	1.0000	0.0	0.00%	2.5	0.13%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-0.000e+00	1.0000	0.0	0.00%	4.4	0.23%
FHY3(FAR1)/Arabidopsis-FHY3-ChIP-Seq(GSE30711)/Homer	HHCACGCGCBTN	1e0	-0.000e+00	1.0000	0.0	0.00%	4.6	0.25%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
Unknown2/Arabidopsis-Promoters/Homer	AAACGACGTCGTTTT	1e0	0.000e+00	1.0000	0.0	0.00%	1.0	0.05%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
LIN-15B(Zf)/cElegans-L3-LIN15B-ChIP-Seq(modEncode)/Homer	CARTGGAGCGCRYTTGCATT	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	0.000e+00	1.0000	0.0	0.00%	0.8	0.04%
DREF/Drosophila-Promoters/Homer	AVYTATCGATAD	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	0.000e+00	1.0000	0.0	0.00%	0.8	0.04%
 Ik-1	NHTTGGGAATRCC	1e0	0.000e+00	1.0000	1757.0	100.00%	1855.2	100.00%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	0.000e+00	1.0000	0.0	0.00%	1.0	0.05%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	0.000e+00	1.0000	0.0	0.00%	1.1	0.06%
GEI-11(Myb?)/cElegans-L4-GEI11-ChIP-Seq(modEncode)/Homer	CCGACAYYTYACGGG	1e0	0.000e+00	1.0000	0.0	0.00%	1.3	0.07%
EFL-1(E2F)/cElegans-L1-EFL1-ChIP-Seq(modEncode)/Homer	TGCAARYGCGCTCYA	1e0	0.000e+00	1.0000	0.0	0.00%	1.0	0.05%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	0.000e+00	1.0000	0.0	0.00%	1.3	0.07%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	0.000e+00	1.0000	0.0	0.00%	1.9	0.10%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	0.000e+00	1.0000	0.0	0.00%	5.0	0.27%