Information for 13-CTTCCCTTGT (Motif 13)


Reverse Opposite:

p-value:1e-5
log p-value:-1.288e+01
Information Content per bp:1.786
Number of Target Sequences with motif29.0
Percentage of Target Sequences with motif3.00%
Number of Background Sequences with motif3.1
Percentage of Background Sequences with motif0.34%
Average Position of motif in Targets34.6 +/- 21.2bp
Average Position of motif in Background45.1 +/- 16.7bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:1
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:CTTCCCTTGT-
-TGACCTTGAV

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:2
Score:0.67
Offset:-3
Orientation:reverse strand
Alignment:---CTTCCCTTGT
NNACTTGCCTT--

UME1/UME1_YPD/[](Harbison)/Yeast

Match Rank:3
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---CTTCCCTTGT
TACNTTTCCTT--

Nr5a2/MA0505.1/Jaspar

Match Rank:4
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-CTTCCCTTGT----
GCTGACCTTGAACTN

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:5
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:CTTCCCTTGT-
-TGACCTTGAN

GCR2/MA0305.1/Jaspar

Match Rank:6
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-CTTCCCTTGT
GCTTCCT----

Sox2/MA0143.3/Jaspar

Match Rank:7
Score:0.64
Offset:3
Orientation:forward strand
Alignment:CTTCCCTTGT-
---CCTTTGTT

NDD1(MacIsaac)/Yeast

Match Rank:8
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:CTTCCCTTGT
TTTCCCCTTT

Kr/dmmpmm(SeSiMCMC)/fly

Match Rank:9
Score:0.64
Offset:1
Orientation:forward strand
Alignment:CTTCCCTTGT
-AACCCTTTT

DOF5.7/MA0984.1/Jaspar

Match Rank:10
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:CTTCCCTTGT
--CCTCTTTT