Information for 14-GAACCAAGGA (Motif 14)


Reverse Opposite:

p-value:1e-5
log p-value:-1.173e+01
Information Content per bp:1.544
Number of Target Sequences with motif27.0
Percentage of Target Sequences with motif2.79%
Number of Background Sequences with motif3.4
Percentage of Background Sequences with motif0.38%
Average Position of motif in Targets42.0 +/- 19.1bp
Average Position of motif in Background38.1 +/- 12.0bp
Strand Bias (log2 ratio + to - strand density)1.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0061.1_Sox11_1/Jaspar

Match Rank:1
Score:0.77
Offset:-4
Orientation:forward strand
Alignment:----GAACCAAGGA---
ATAAGAACAAAGGACTA

PB0071.1_Sox4_1/Jaspar

Match Rank:2
Score:0.76
Offset:-4
Orientation:forward strand
Alignment:----GAACCAAGGA---
AGAAGAACAAAGGACTA

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:3
Score:0.73
Offset:-1
Orientation:reverse strand
Alignment:-GAACCAAGGA
GGAACAAAGR-

Sox3/MA0514.1/Jaspar

Match Rank:4
Score:0.70
Offset:-1
Orientation:reverse strand
Alignment:-GAACCAAGGA
AAAACAAAGG-

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:5
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:GAACCAAGGA
GAACAATGGN

D/MA0445.1/Jaspar

Match Rank:6
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-GAACCAAGGA
ANAACAATGGA

Sox2/MA0143.3/Jaspar

Match Rank:7
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:GAACCAAGGA
-AACAAAGG-

bin/dmmpmm(Pollard)/fly

Match Rank:8
Score:0.66
Offset:0
Orientation:forward strand
Alignment:GAACCAAGGA
TAAACAAAGA

OPI1/MA0349.1/Jaspar

Match Rank:9
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-GAACCAAGGA
CGAACCG----

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:10
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-GAACCAAGGA
VRRACAAWGG-