Information for 3-AAGCAATTCT (Motif 3)


Reverse Opposite:

p-value:1e-19
log p-value:-4.527e+01
Information Content per bp:1.825
Number of Target Sequences with motif72.0
Percentage of Target Sequences with motif7.44%
Number of Background Sequences with motif1.0
Percentage of Background Sequences with motif0.11%
Average Position of motif in Targets36.4 +/- 15.8bp
Average Position of motif in Background29.3 +/- 3.8bp
Strand Bias (log2 ratio + to - strand density)-0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0175.1_Sox4_2/Jaspar

Match Rank:1
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-AAGCAATTCT------
GGAAAAATTGTTAGGAA

NTL9/MA1046.1/Jaspar

Match Rank:2
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--AAGCAATTCT
TTAAGTAAT---

Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer

Match Rank:3
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-AAGCAATTCT
TAATCAATTA-

pho/dmmpmm(Bergman)/fly

Match Rank:4
Score:0.63
Offset:2
Orientation:forward strand
Alignment:AAGCAATTCT
--GCCATT--

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:5
Score:0.62
Offset:3
Orientation:forward strand
Alignment:AAGCAATTCT---
---CCATTGTTNY

PB0070.1_Sox30_1/Jaspar

Match Rank:6
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-AAGCAATTCT-----
ANNTCCATTGTTCNNN

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:7
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:AAGCAATTCT--
--NCCATTGTTY

PB0173.1_Sox21_2/Jaspar

Match Rank:8
Score:0.62
Offset:0
Orientation:forward strand
Alignment:AAGCAATTCT-------
AATCAATTGTTCCGCTA

PH0007.1_Barx1/Jaspar

Match Rank:9
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-AAGCAATTCT-----
AAAGTAATTAGTGAAT

PB0165.1_Sox11_2/Jaspar

Match Rank:10
Score:0.61
Offset:2
Orientation:forward strand
Alignment:AAGCAATTCT------
--AAAATTGTTATGAA