Information for 4-CGTCTCGA (Motif 4)


Reverse Opposite:

p-value:1e-18
log p-value:-4.217e+01
Information Content per bp:1.629
Number of Target Sequences with motif153.0
Percentage of Target Sequences with motif15.81%
Number of Background Sequences with motif35.0
Percentage of Background Sequences with motif3.86%
Average Position of motif in Targets38.8 +/- 20.8bp
Average Position of motif in Background35.3 +/- 20.1bp
Strand Bias (log2 ratio + to - strand density)-0.8
Multiplicity (# of sites on avg that occur together)1.10
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

XBP1/MA0414.1/Jaspar

Match Rank:1
Score:0.72
Offset:2
Orientation:reverse strand
Alignment:CGTCTCGA-
--NCTCGAG

PB0139.1_Irf5_2/Jaspar

Match Rank:2
Score:0.69
Offset:-3
Orientation:reverse strand
Alignment:---CGTCTCGA----
NNAATTCTCGNTNAN

ABF2/MA0266.1/Jaspar

Match Rank:3
Score:0.68
Offset:2
Orientation:reverse strand
Alignment:CGTCTCGA-
--TCTAGAN

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---CGTCTCGA
VBSYGTCTGG-

PB0138.1_Irf4_2/Jaspar

Match Rank:5
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---CGTCTCGA----
AGTATTCTCGGTTGC

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-CGTCTCGA
CTGTCTGG-

SMAD3/MA0795.1/Jaspar

Match Rank:7
Score:0.67
Offset:0
Orientation:forward strand
Alignment:CGTCTCGA--
CGTCTAGACA

XBP1/Literature(Harbison)/Yeast

Match Rank:8
Score:0.67
Offset:3
Orientation:reverse strand
Alignment:CGTCTCGA--
---CTCGAAG

PB0160.1_Rfxdc2_2/Jaspar

Match Rank:9
Score:0.67
Offset:-4
Orientation:reverse strand
Alignment:----CGTCTCGA-----
NTNNCGTATCCAAGTNN

XBP1(MacIsaac)/Yeast

Match Rank:10
Score:0.66
Offset:3
Orientation:forward strand
Alignment:CGTCTCGA---
---CTCGAGGA