Information for 7-CAGGAGAA (Motif 7)


Reverse Opposite:

p-value:1e-13
log p-value:-3.184e+01
Information Content per bp:1.919
Number of Target Sequences with motif92.0
Percentage of Target Sequences with motif9.50%
Number of Background Sequences with motif15.8
Percentage of Background Sequences with motif1.74%
Average Position of motif in Targets37.2 +/- 14.3bp
Average Position of motif in Background44.0 +/- 28.1bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.01
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

ttk/MA0460.1/Jaspar

Match Rank:1
Score:0.75
Offset:0
Orientation:forward strand
Alignment:CAGGAGAA-
AAGGATAAT

RAV1(2)(AP2/EREBP)/Arabidopsis thaliana/AthaMap

Match Rank:2
Score:0.73
Offset:-4
Orientation:reverse strand
Alignment:----CAGGAGAA
GNNTCAGGTGAN

RAV1(var.2)/MA0583.1/Jaspar

Match Rank:3
Score:0.73
Offset:-4
Orientation:reverse strand
Alignment:----CAGGAGAA
GNNTCAGGTGAN

ttk/dmmpmm(Noyes)/fly

Match Rank:4
Score:0.72
Offset:-1
Orientation:reverse strand
Alignment:-CAGGAGAA-----
CAAGGATAATCNAA

CUP2/MA0287.1/Jaspar

Match Rank:5
Score:0.66
Offset:0
Orientation:forward strand
Alignment:CAGGAGAA---
CAGCAAAAATG

INO2/MA0321.1/Jaspar

Match Rank:6
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-CAGGAGAA
GCATGTGAA

INO2(MacIsaac)/Yeast

Match Rank:7
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-CAGGAGAA
GCATGTGAA

INO4/INO4_YPD/4-INO4,37-INO2(Harbison)/Yeast

Match Rank:8
Score:0.65
Offset:0
Orientation:forward strand
Alignment:CAGGAGAA--
CATGTGAAAA

INO4(MacIsaac)/Yeast

Match Rank:9
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-CAGGAGAA
GCATGTGAA

sna/MA0086.1/Jaspar

Match Rank:10
Score:0.64
Offset:0
Orientation:forward strand
Alignment:CAGGAGAA
CAGGTG--