Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 968)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 907)	% of Background Sequences with Motif
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e-6	-1.510e+01	0.0001	141.0	14.57%	66.9	7.38%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e-5	-1.369e+01	0.0002	92.0	9.50%	36.2	3.99%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e-5	-1.156e+01	0.0012	24.0	2.48%	2.5	0.27%
PABPC1(?)/MEL-PABC1-CLIP-Seq(GSE69755)/Homer	HAATAAAGNN	1e-4	-1.110e+01	0.0015	147.0	15.19%	80.3	8.86%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e-4	-9.962e+00	0.0037	15.0	1.55%	0.0	0.00%
Unknown6/Drosophila-Promoters/Homer	AATTTTAAAA	1e-2	-6.781e+00	0.0732	58.0	5.99%	27.2	3.00%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e-2	-6.712e+00	0.0732	65.0	6.71%	32.6	3.59%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e-2	-6.632e+00	0.0732	44.0	4.55%	18.1	1.99%
SeqBias: TA-repeat	TATATATATA	1e-2	-6.551e+00	0.0732	247.0	25.52%	178.6	19.69%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e-2	-6.022e+00	0.0939	36.0	3.72%	14.1	1.55%
PHA-4(Forkhead)/cElegans-Embryos-PHA4-ChIP-Seq(modEncode)/Homer	KTGTTTGC	1e-2	-5.856e+00	0.1007	151.0	15.60%	101.8	11.23%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e-2	-5.347e+00	0.1536	136.0	14.05%	91.8	10.13%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e-2	-5.264e+00	0.1541	13.0	1.34%	2.8	0.31%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-2	-5.215e+00	0.1541	61.0	6.30%	33.7	3.72%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e-2	-4.839e+00	0.2042	18.0	1.86%	5.2	0.58%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-2	-4.780e+00	0.2042	66.0	6.82%	38.7	4.26%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e-2	-4.666e+00	0.2142	38.0	3.93%	18.8	2.08%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e-1	-4.581e+00	0.2202	49.0	5.06%	26.8	2.95%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-1	-4.487e+00	0.2293	27.0	2.79%	11.3	1.25%
Pho2(bHLH)/Yeast-Pho2-ChIP-Seq(GSE29506)/Homer	CCCACGTGCT	1e-1	-4.400e+00	0.2376	17.0	1.76%	5.8	0.64%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-1	-4.282e+00	0.2545	9.0	0.93%	1.8	0.20%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e-1	-4.229e+00	0.2563	13.0	1.34%	3.1	0.34%
IBL1(bHLH)/Seedling-IBL1-ChIP-Seq(GSE51120)/Homer	CACGTGCC	1e-1	-4.213e+00	0.2563	57.0	5.89%	33.1	3.65%
LHY(Myb)/Seedling-LHY-ChIP-Seq(GSE52175)/Homer	ADAAATATCT	1e-1	-4.198e+00	0.2563	84.0	8.68%	54.2	5.98%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e-1	-4.104e+00	0.2563	18.0	1.86%	6.9	0.76%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e-1	-4.069e+00	0.2563	36.0	3.72%	18.2	2.01%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e-1	-3.974e+00	0.2695	24.0	2.48%	10.9	1.20%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e-1	-3.972e+00	0.2695	16.0	1.65%	5.6	0.62%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e-1	-3.954e+00	0.2695	65.0	6.71%	40.3	4.45%
SeqBias: G/A bias	RRRRRRRRRR	1e-1	-3.802e+00	0.2880	958.0	98.97%	885.2	97.62%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-1	-3.753e+00	0.2926	12.0	1.24%	3.2	0.35%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e-1	-3.644e+00	0.3163	20.0	2.07%	8.4	0.92%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e-1	-3.556e+00	0.3348	15.0	1.55%	5.3	0.59%
SeqBias: CG bias	SSSSSSSSSS	1e-1	-3.444e+00	0.3634	432.0	44.63%	365.3	40.28%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e-1	-3.436e+00	0.3634	60.0	6.20%	38.2	4.21%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e-1	-3.431e+00	0.3634	51.0	5.27%	31.0	3.42%
Unknown3/Arabidopsis-Promoters/Homer	AYTAAACCGG	1e-1	-3.308e+00	0.3634	5.0	0.52%	0.8	0.09%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e-1	-3.308e+00	0.3634	5.0	0.52%	0.0	0.00%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e-1	-3.308e+00	0.3634	5.0	0.52%	0.6	0.07%
SUT1?/SacCer-Promoters/Homer	CCCCGCGC	1e-1	-3.222e+00	0.3858	275.0	28.41%	224.6	24.77%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e-1	-3.192e+00	0.3879	9.0	0.93%	2.5	0.27%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e-1	-3.056e+00	0.4339	48.0	4.96%	30.5	3.36%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e-1	-2.891e+00	0.4995	29.0	3.00%	16.3	1.80%
Pho4(bHLH)/Yeast-Pho4-ChIP-Seq(GSE29506)/Homer	AAGCACGTGBGD	1e-1	-2.843e+00	0.5124	10.0	1.03%	3.4	0.37%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e-1	-2.834e+00	0.5124	162.0	16.74%	127.1	14.01%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e-1	-2.767e+00	0.5287	265.0	27.38%	219.1	24.16%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e-1	-2.765e+00	0.5287	13.0	1.34%	5.2	0.58%
Unknown2/Drosophila-Promoters/Homer	CATCMCTA	1e-1	-2.747e+00	0.5287	44.0	4.55%	28.4	3.13%
SeqBias: GCW-triplet	GCWGCWGCWGCW	1e-1	-2.745e+00	0.5287	930.0	96.07%	856.2	94.42%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-1	-2.722e+00	0.5287	31.0	3.20%	18.2	2.01%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e-1	-2.706e+00	0.5287	8.0	0.83%	3.0	0.33%
SFP1/SacCer-Promoters/Homer	DDAAAAATTTTY	1e-1	-2.706e+00	0.5287	8.0	0.83%	2.1	0.24%
KANADI1(Myb)/Seedling-KAN1-ChIP-Seq(GSE48081)/Homer	ARGAATAWWN	1e-1	-2.560e+00	0.5645	64.0	6.61%	45.4	5.01%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e-1	-2.558e+00	0.5645	21.0	2.17%	11.2	1.23%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e-1	-2.494e+00	0.5813	39.0	4.03%	25.5	2.81%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e-1	-2.460e+00	0.5904	26.0	2.69%	15.4	1.70%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e-1	-2.436e+00	0.5940	56.0	5.79%	39.8	4.39%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e-1	-2.428e+00	0.5940	15.0	1.55%	7.5	0.82%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e-1	-2.412e+00	0.5940	9.0	0.93%	3.9	0.43%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e-1	-2.375e+00	0.5999	19.0	1.96%	11.0	1.21%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e-1	-2.375e+00	0.5999	52.0	5.37%	36.3	4.00%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-2.277e+00	0.6404	20.0	2.07%	11.7	1.29%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e0	-2.271e+00	0.6404	67.0	6.92%	50.0	5.51%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-2.238e+00	0.6404	7.0	0.72%	2.7	0.30%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-2.238e+00	0.6404	7.0	0.72%	2.9	0.32%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	-2.204e+00	0.6469	63.0	6.51%	46.6	5.13%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e0	-2.200e+00	0.6469	10.0	1.03%	5.0	0.55%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e0	-2.107e+00	0.6920	14.0	1.45%	7.0	0.77%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e0	-2.101e+00	0.6920	48.0	4.96%	34.2	3.77%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-2.077e+00	0.6920	5.0	0.52%	1.9	0.21%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e0	-2.077e+00	0.6920	5.0	0.52%	1.3	0.14%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-2.000e+00	0.7077	8.0	0.83%	3.5	0.38%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-2.000e+00	0.7077	8.0	0.83%	3.7	0.41%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e0	-2.000e+00	0.7077	8.0	0.83%	3.9	0.43%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e0	-1.983e+00	0.7077	3.0	0.31%	0.0	0.00%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-1.983e+00	0.7077	3.0	0.31%	0.9	0.10%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-1.983e+00	0.7077	3.0	0.31%	0.5	0.06%
AARE(HLH)/mES-cMyc-ChIP-Seq/Homer	GATTGCATCA	1e0	-1.983e+00	0.7077	3.0	0.31%	0.0	0.00%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-1.983e+00	0.7077	3.0	0.31%	0.5	0.06%
ABF1/SacCer-Promoters/Homer	CGTRNAAARTGA	1e0	-1.983e+00	0.7077	3.0	0.31%	0.7	0.07%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-1.983e+00	0.7077	3.0	0.31%	0.8	0.09%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-1.983e+00	0.7077	3.0	0.31%	0.0	0.00%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e0	-1.935e+00	0.7077	20.0	2.07%	12.4	1.37%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-1.909e+00	0.7077	12.0	1.24%	6.9	0.76%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e0	-1.864e+00	0.7077	43.0	4.44%	31.4	3.46%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-1.831e+00	0.7213	9.0	0.93%	4.2	0.46%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-1.807e+00	0.7298	22.0	2.27%	14.0	1.55%
E-box/Arabidopsis-Promoters/Homer	GCCACGTG	1e0	-1.803e+00	0.7298	13.0	1.34%	7.0	0.77%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-1.791e+00	0.7298	6.0	0.62%	2.9	0.32%
PIF4(bHLH)/Seedling-PIF4-ChIP-Seq(GSE35315)/Homer	NNBCACGTGN	1e0	-1.730e+00	0.7622	41.0	4.24%	30.4	3.35%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-1.702e+00	0.7750	10.0	1.03%	5.3	0.59%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)	NNAYTTCCTGHN	1e0	-1.657e+00	0.8023	25.0	2.58%	17.0	1.88%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-1.651e+00	0.8023	58.0	5.99%	46.0	5.07%
SeqBias: A/T bias	WWWWWWWWWW	1e0	-1.647e+00	0.8023	674.0	69.63%	613.9	67.71%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e0	-1.620e+00	0.8063	45.0	4.65%	34.5	3.81%
Unknown1/Arabidopsis-Promoters/Homer	RGGGTAWWWTHGTAA	1e0	-1.611e+00	0.8063	7.0	0.72%	3.2	0.35%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e0	-1.571e+00	0.8288	47.0	4.86%	36.4	4.01%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e0	-1.568e+00	0.8288	4.0	0.41%	1.3	0.14%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e0	-1.568e+00	0.8288	4.0	0.41%	2.0	0.22%
Oct6(POU,Homeobox)/NPC-Oct6-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e0	-1.518e+00	0.8480	12.0	1.24%	7.2	0.79%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e0	-1.517e+00	0.8480	17.0	1.76%	11.2	1.24%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e0	-1.499e+00	0.8480	23.0	2.38%	16.7	1.84%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e0	-1.449e+00	0.8738	13.0	1.34%	9.0	0.99%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-1.449e+00	0.8738	13.0	1.34%	8.4	0.93%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e0	-1.390e+00	0.9182	14.0	1.45%	10.0	1.10%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-1.378e+00	0.9206	57.0	5.89%	46.8	5.16%
PCF/Arabidopsis-Promoters/Homer	NNWWWTGGGCYTDDN	1e0	-1.370e+00	0.9206	5.0	0.52%	2.8	0.31%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-1.366e+00	0.9206	104.0	10.74%	88.3	9.74%
SeqBias: C/A-bias	MMMMMMMMMM	1e0	-1.350e+00	0.9206	929.0	95.97%	863.6	95.24%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e0	-1.342e+00	0.9206	21.0	2.17%	15.5	1.71%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e0	-1.342e+00	0.9206	21.0	2.17%	16.0	1.76%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-1.342e+00	0.9206	21.0	2.17%	15.1	1.66%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e0	-1.341e+00	0.9206	35.0	3.62%	27.8	3.07%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e0	-1.322e+00	0.9206	2.0	0.21%	0.0	0.00%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e0	-1.322e+00	0.9206	2.0	0.21%	0.0	0.00%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-1.322e+00	0.9206	2.0	0.21%	0.8	0.09%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e0	-1.322e+00	0.9206	2.0	0.21%	0.0	0.00%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-1.322e+00	0.9206	2.0	0.21%	0.8	0.09%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e0	-1.322e+00	0.9206	2.0	0.21%	0.0	0.00%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-1.322e+00	0.9206	2.0	0.21%	0.5	0.06%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-1.322e+00	0.9206	2.0	0.21%	0.9	0.10%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e0	-1.298e+00	0.9206	45.0	4.65%	36.3	4.00%
EGL-5(Homeobox)/cElegans-L3-EGL5-ChIP-Seq(modEncode)/Homer	ATTTAATGGG	1e0	-1.256e+00	0.9206	75.0	7.75%	63.5	7.00%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	-1.254e+00	0.9206	17.0	1.76%	12.2	1.35%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-1.254e+00	0.9206	17.0	1.76%	12.3	1.36%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-1.253e+00	0.9206	11.0	1.14%	7.5	0.83%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e0	-1.164e+00	0.9519	7.0	0.72%	4.1	0.45%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e0	-1.157e+00	0.9519	45.0	4.65%	37.8	4.17%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e0	-1.151e+00	0.9519	28.0	2.89%	22.6	2.49%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e0	-1.105e+00	0.9860	22.0	2.27%	17.1	1.89%
TATA-box/Drosophila-Promoters/Homer	CTATAAAAGCSV	1e0	-1.086e+00	0.9860	3.0	0.31%	1.9	0.20%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e0	-1.086e+00	0.9860	3.0	0.31%	1.9	0.21%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-1.086e+00	0.9860	3.0	0.31%	1.2	0.13%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	-1.086e+00	0.9860	3.0	0.31%	1.2	0.14%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e0	-1.086e+00	0.9860	3.0	0.31%	1.8	0.20%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-1.086e+00	0.9860	3.0	0.31%	1.3	0.14%
Unknown1(NR/Ini-like)/Drosophila-Promoters/Homer	MYGGTCACACTG	1e0	-1.086e+00	0.9860	3.0	0.31%	1.2	0.13%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e0	-1.050e+00	0.9860	9.0	0.93%	6.9	0.76%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e0	-1.050e+00	0.9860	9.0	0.93%	6.7	0.74%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e0	-1.050e+00	0.9860	9.0	0.93%	6.3	0.69%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-1.009e+00	1.0000	10.0	1.03%	7.1	0.78%
PIF5ox(bHLH)/Arabidopsis-PIF5ox-ChIP-Seq(GSE35062)/Homer	BCACGTGVDN	1e0	-9.890e-01	1.0000	28.0	2.89%	23.7	2.61%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	-9.890e-01	1.0000	28.0	2.89%	23.3	2.57%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e0	-9.807e-01	1.0000	4.0	0.41%	2.6	0.29%
DPL-1(E2F)/cElegans-Adult-ChIP-Seq(modEncode)/Homer	TAGCGCGC	1e0	-9.807e-01	1.0000	4.0	0.41%	2.3	0.25%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e0	-9.473e-01	1.0000	64.0	6.61%	56.9	6.28%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e0	-9.473e-01	1.0000	64.0	6.61%	56.6	6.24%
RBFox2(?)/Heart-RBFox2-CLIP-Seq(GSE57926)/Homer	TGCATGCA	1e0	-9.385e-01	1.0000	77.0	7.95%	68.0	7.50%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e0	-9.168e-01	1.0000	5.0	0.52%	3.7	0.41%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-9.168e-01	1.0000	5.0	0.52%	3.8	0.42%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-9.168e-01	1.0000	5.0	0.52%	3.5	0.39%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-9.168e-01	1.0000	5.0	0.52%	3.2	0.36%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e0	-9.125e-01	1.0000	23.0	2.38%	19.1	2.11%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-9.004e-01	1.0000	46.0	4.75%	40.9	4.51%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-8.959e-01	1.0000	35.0	3.62%	30.8	3.40%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e0	-8.586e-01	1.0000	16.0	1.65%	13.6	1.50%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e0	-8.458e-01	1.0000	28.0	2.89%	24.3	2.68%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-8.345e-01	1.0000	29.0	3.00%	25.6	2.82%
caudal(Homeobox)/Drosophila-Embryos-ChIP-Chip(modEncode)/Homer	GGYCATAAAW	1e0	-8.274e-01	1.0000	42.0	4.34%	37.7	4.16%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e0	-8.114e-01	1.0000	8.0	0.83%	6.3	0.69%
SPCH(bHLH)/Seedling-SPCH-ChIP-Seq(GSE57497)/Homer	WNBCACGTGA	1e0	-7.945e-01	1.0000	33.0	3.41%	29.8	3.29%
RLR1?/SacCer-Promoters/Homer	WTTTTCYYTTTT	1e0	-7.760e-01	1.0000	22.0	2.27%	19.6	2.17%
SeqBias: GA-repeat	GAGAGAGAGA	1e0	-7.619e-01	1.0000	349.0	36.05%	324.7	35.81%
CES-1(Homeobox)/cElegans-L1-CES1-ChIP-Seq(modEncode)/Homer	AAATTSAATTTN	1e0	-7.552e-01	1.0000	24.0	2.48%	21.3	2.35%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-7.385e-01	1.0000	40.0	4.13%	36.3	4.00%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e0	-7.366e-01	1.0000	26.0	2.69%	23.7	2.62%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-7.316e-01	1.0000	41.0	4.24%	37.6	4.15%
LIN-39(Homeobox)/cElegans.L3-LIN39-ChIP-Seq(modEncode)/Homer	ATGATTRATG	1e0	-7.295e-01	1.0000	56.0	5.79%	51.1	5.64%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e0	-6.926e-01	1.0000	16.0	1.65%	14.6	1.61%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	-6.612e-01	1.0000	86.0	8.88%	80.2	8.84%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-6.606e-01	1.0000	1.0	0.10%	0.0	0.00%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e0	-6.606e-01	1.0000	1.0	0.10%	0.0	0.00%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e0	-6.606e-01	1.0000	1.0	0.10%	0.0	0.00%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-6.606e-01	1.0000	1.0	0.10%	0.0	0.00%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	-6.606e-01	1.0000	1.0	0.10%	0.0	0.00%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e0	-6.606e-01	1.0000	1.0	0.10%	0.7	0.08%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e0	-6.606e-01	1.0000	1.0	0.10%	0.0	0.00%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	-6.606e-01	1.0000	1.0	0.10%	0.0	0.00%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-6.606e-01	1.0000	1.0	0.10%	0.0	0.00%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	-6.606e-01	1.0000	1.0	0.10%	0.8	0.09%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e0	-6.447e-01	1.0000	2.0	0.21%	1.8	0.19%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-6.447e-01	1.0000	2.0	0.21%	1.8	0.20%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e0	-6.329e-01	1.0000	3.0	0.31%	2.1	0.23%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e0	-6.318e-01	1.0000	24.0	2.48%	22.9	2.52%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e0	-6.232e-01	1.0000	4.0	0.41%	3.7	0.41%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	-6.232e-01	1.0000	4.0	0.41%	3.2	0.35%
SeqBias: polyC-repeat	CCCCCCCCCC	1e0	-6.154e-01	1.0000	806.0	83.26%	755.5	83.32%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-6.148e-01	1.0000	5.0	0.52%	4.7	0.52%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e0	-6.148e-01	1.0000	5.0	0.52%	4.4	0.49%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-6.092e-01	1.0000	28.0	2.89%	26.7	2.94%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-5.944e-01	1.0000	31.0	3.20%	29.2	3.22%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e0	-5.827e-01	1.0000	10.0	1.03%	9.0	0.99%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e0	-5.678e-01	1.0000	13.0	1.34%	12.9	1.42%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e0	-5.632e-01	1.0000	14.0	1.45%	13.5	1.49%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-5.632e-01	1.0000	14.0	1.45%	13.1	1.45%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e0	-5.589e-01	1.0000	15.0	1.55%	14.1	1.56%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-5.330e-01	1.0000	47.0	4.86%	45.0	4.97%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e0	-4.734e-01	1.0000	43.0	4.44%	42.1	4.64%
Initiator/Drosophila-Promoters/Homer	NTCAGTYG	1e0	-4.520e-01	1.0000	79.0	8.16%	77.7	8.57%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-4.408e-01	1.0000	14.0	1.45%	14.0	1.55%
Zelda(Zf)/Embryo-zld-ChIP-Seq(GSE65441)/Homer	KBCTACCTGW	1e0	-4.398e-01	1.0000	12.0	1.24%	12.6	1.39%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-4.390e-01	1.0000	19.0	1.96%	19.4	2.14%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-4.387e-01	1.0000	11.0	1.14%	11.6	1.28%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-4.370e-01	1.0000	10.0	1.03%	10.5	1.16%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e0	-4.311e-01	1.0000	8.0	0.83%	8.7	0.95%
Unknown4/Drosophila-Promoters/Homer	AAAAATACCRMA	1e0	-4.311e-01	1.0000	8.0	0.83%	8.7	0.96%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-4.264e-01	1.0000	7.0	0.72%	7.7	0.85%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e0	-4.264e-01	1.0000	7.0	0.72%	7.7	0.85%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-4.264e-01	1.0000	7.0	0.72%	7.9	0.87%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-4.264e-01	1.0000	7.0	0.72%	7.6	0.83%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-4.226e-01	1.0000	33.0	3.41%	33.8	3.73%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-4.197e-01	1.0000	6.0	0.62%	6.9	0.76%
Dorsal(RHD)/Embryo-dl-ChIP-Seq(GSE65441)/Homer	GGGAAAAMCCCG	1e0	-4.103e-01	1.0000	5.0	0.52%	5.3	0.58%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	-4.036e-01	1.0000	129.0	13.33%	126.7	13.97%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e0	-4.013e-01	1.0000	48.0	4.96%	48.6	5.36%
TOD6?/SacCer-Promoters/Homer	GCGATGAGMT	1e0	-3.966e-01	1.0000	4.0	0.41%	4.9	0.54%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e0	-3.966e-01	1.0000	4.0	0.41%	4.3	0.47%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-3.754e-01	1.0000	3.0	0.31%	3.2	0.35%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e0	-3.732e-01	1.0000	125.0	12.91%	123.1	13.57%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-3.571e-01	1.0000	29.0	3.00%	30.2	3.33%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-3.523e-01	1.0000	19.0	1.96%	20.2	2.23%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e0	-3.486e-01	1.0000	46.0	4.75%	47.6	5.25%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-3.437e-01	1.0000	92.0	9.50%	92.3	10.18%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-3.422e-01	1.0000	54.0	5.58%	55.1	6.08%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-3.395e-01	1.0000	2.0	0.21%	2.5	0.27%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-3.395e-01	1.0000	2.0	0.21%	2.7	0.30%
HLH-1(bHLH)/cElegans-Embryo-HLH1-ChIP-Seq(modEncode)/Homer	RACAGCTGTTBH	1e0	-3.386e-01	1.0000	13.0	1.34%	15.0	1.65%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-3.386e-01	1.0000	13.0	1.34%	14.6	1.61%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-3.177e-01	1.0000	9.0	0.93%	10.5	1.16%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-2.996e-01	1.0000	7.0	0.72%	8.0	0.89%
SeqBias: CG-repeat	CGCGCGCGCG	1e0	-2.981e-01	1.0000	32.0	3.31%	34.5	3.80%
Unknown4/Arabidopsis-Promoters/Homer	CKTCKTCTTY	1e0	-2.975e-01	1.0000	31.0	3.20%	33.2	3.66%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e0	-2.969e-01	1.0000	30.0	3.10%	32.4	3.57%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e0	-2.969e-01	1.0000	30.0	3.10%	33.0	3.63%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e0	-2.872e-01	1.0000	6.0	0.62%	7.5	0.82%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e0	-2.778e-01	1.0000	18.0	1.86%	20.0	2.21%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-2.660e-01	1.0000	1.0	0.10%	1.9	0.21%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e0	-2.660e-01	1.0000	1.0	0.10%	1.1	0.13%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e0	-2.660e-01	1.0000	1.0	0.10%	1.3	0.14%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e0	-2.660e-01	1.0000	1.0	0.10%	1.5	0.17%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-2.660e-01	1.0000	1.0	0.10%	1.9	0.21%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-2.509e-01	1.0000	4.0	0.41%	5.9	0.65%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e0	-2.457e-01	1.0000	11.0	1.14%	13.0	1.44%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e0	-2.277e-01	1.0000	21.0	2.17%	24.9	2.74%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e0	-2.248e-01	1.0000	20.0	2.07%	23.2	2.55%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e0	-2.160e-01	1.0000	43.0	4.44%	47.1	5.19%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e0	-2.141e-01	1.0000	17.0	1.76%	20.5	2.26%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e0	-2.141e-01	1.0000	17.0	1.76%	20.1	2.22%
GAGA-repeat/SacCer-Promoters/Homer	CTYTCTYTCTCTCTC	1e0	-2.117e-01	1.0000	179.0	18.49%	181.4	20.01%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-2.081e-01	1.0000	7.0	0.72%	9.5	1.05%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e0	-2.047e-01	1.0000	32.0	3.31%	36.7	4.05%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e0	-1.942e-01	1.0000	6.0	0.62%	8.6	0.95%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-1.942e-01	1.0000	6.0	0.62%	8.4	0.92%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	-1.925e-01	1.0000	78.0	8.06%	83.0	9.16%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e0	-1.920e-01	1.0000	65.0	6.71%	70.5	7.77%
REB1/SacCer-Promoters/Homer	KCCGGGTAAYRR	1e0	-1.829e-01	1.0000	2.0	0.21%	3.4	0.38%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e0	-1.775e-01	1.0000	5.0	0.52%	7.4	0.82%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e0	-1.654e-01	1.0000	17.0	1.76%	21.6	2.38%
SOC1(MADS)/Seedling-SOC1-ChIP-Seq(GSE45846)/Homer	TWCCAWWTWTGG	1e0	-1.641e-01	1.0000	9.0	0.93%	12.7	1.40%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-1.605e-01	1.0000	53.0	5.48%	59.4	6.55%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e0	-1.604e-01	1.0000	28.0	2.89%	33.6	3.70%
PQM-1(?)/cElegans-L3-ChIP-Seq(modEncode)/Homer	ACTGATAAGA	1e0	-1.541e-01	1.0000	8.0	0.83%	11.0	1.22%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e0	-1.478e-01	1.0000	23.0	2.38%	28.4	3.13%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-1.398e-01	1.0000	59.0	6.10%	66.8	7.36%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e0	-1.382e-01	1.0000	20.0	2.07%	25.2	2.77%
Tal1	CATCTG	1e0	-1.333e-01	1.0000	30.0	3.10%	36.0	3.97%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e0	-1.329e-01	1.0000	49.0	5.06%	57.0	6.29%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e0	-1.317e-01	1.0000	3.0	0.31%	5.7	0.63%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-1.317e-01	1.0000	11.0	1.14%	15.5	1.71%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e0	-1.312e-01	1.0000	29.0	3.00%	35.4	3.91%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e0	-1.307e-01	1.0000	18.0	1.86%	23.6	2.60%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e0	-1.288e-01	1.0000	90.0	9.30%	99.0	10.92%
ELT-3(Gata)/cElegans-L1-ELT3-ChIP-Seq(modEncode)/Homer	AWTGATAAGA	1e0	-1.241e-01	1.0000	10.0	1.03%	14.0	1.54%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e0	-1.197e-01	1.0000	1.0	0.10%	2.6	0.29%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-1.197e-01	1.0000	1.0	0.10%	2.4	0.27%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	-1.174e-01	1.0000	15.0	1.55%	20.1	2.22%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e0	-1.123e-01	1.0000	14.0	1.45%	19.4	2.14%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-1.092e-01	1.0000	31.0	3.20%	38.2	4.21%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e0	-1.067e-01	1.0000	8.0	0.83%	12.3	1.35%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-9.901e-02	1.0000	2.0	0.21%	4.9	0.54%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-9.901e-02	1.0000	2.0	0.21%	4.7	0.52%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-9.901e-02	1.0000	2.0	0.21%	4.1	0.45%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e0	-9.610e-02	1.0000	25.0	2.58%	32.3	3.56%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-8.940e-02	1.0000	32.0	3.31%	40.7	4.49%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	-8.797e-02	1.0000	10.0	1.03%	15.8	1.74%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-8.540e-02	1.0000	6.0	0.62%	10.5	1.16%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e0	-8.540e-02	1.0000	6.0	0.62%	10.2	1.13%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e0	-7.888e-02	1.0000	19.0	1.96%	26.7	2.95%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-7.888e-02	1.0000	19.0	1.96%	26.5	2.93%
SeqBias: polyA-repeat	AAAAAAAAAA	1e0	-7.195e-02	1.0000	878.0	90.70%	838.9	92.52%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-6.969e-02	1.0000	80.0	8.26%	92.1	10.16%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	-6.623e-02	1.0000	29.0	3.00%	38.3	4.22%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e0	-6.513e-02	1.0000	38.0	3.93%	48.4	5.33%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e0	-6.449e-02	1.0000	15.0	1.55%	22.3	2.46%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e0	-6.448e-02	1.0000	7.0	0.72%	12.9	1.42%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-5.944e-02	1.0000	4.0	0.41%	8.9	0.98%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-5.944e-02	1.0000	4.0	0.41%	8.5	0.93%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e0	-5.886e-02	1.0000	58.0	5.99%	70.6	7.78%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e0	-5.627e-02	1.0000	13.0	1.34%	20.2	2.23%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-5.549e-02	1.0000	6.0	0.62%	11.6	1.28%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e0	-5.549e-02	1.0000	6.0	0.62%	12.0	1.32%
Cbf1(bHLH)/Yeast-Cbf1-ChIP-Seq(GSE29506)/Homer	TCACGTGAYH	1e0	-5.342e-02	1.0000	2.0	0.21%	5.6	0.62%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-5.342e-02	1.0000	2.0	0.21%	5.7	0.63%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-5.006e-02	1.0000	60.0	6.20%	73.3	8.08%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e0	-5.006e-02	1.0000	60.0	6.20%	73.7	8.13%
SeqBias: CA-repeat	CACACACACA	1e0	-4.583e-02	1.0000	177.0	18.29%	193.4	21.33%
GAGA-repeat/Arabidopsis-Promoters/Homer	CTCTCTCTCY	1e0	-4.475e-02	1.0000	32.0	3.31%	43.8	4.83%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-4.262e-02	1.0000	10.0	1.03%	17.2	1.90%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-4.249e-02	1.0000	7.0	0.72%	13.5	1.49%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-4.091e-02	1.0000	99.0	10.23%	115.4	12.73%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-3.928e-02	1.0000	71.0	7.33%	86.6	9.55%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-3.673e-02	1.0000	16.0	1.65%	25.0	2.76%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-3.584e-02	1.0000	4.0	0.41%	9.7	1.07%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-3.288e-02	1.0000	11.0	1.14%	19.0	2.10%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-3.120e-02	1.0000	14.0	1.45%	23.0	2.54%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-2.942e-02	1.0000	22.0	2.27%	33.4	3.68%
Unknown5/Drosophila-Promoters/Homer	GCTGATAASV	1e0	-2.913e-02	1.0000	10.0	1.03%	18.4	2.03%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e0	-2.864e-02	1.0000	2.0	0.21%	6.6	0.73%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	-2.624e-02	1.0000	38.0	3.93%	52.9	5.83%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-2.546e-02	1.0000	3.0	0.31%	8.3	0.92%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e0	-2.430e-02	1.0000	15.0	1.55%	25.8	2.85%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-2.329e-02	1.0000	23.0	2.38%	35.9	3.96%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-2.190e-02	1.0000	22.0	2.27%	34.9	3.84%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-2.152e-02	1.0000	8.0	0.83%	16.0	1.77%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-1.892e-02	1.0000	51.0	5.27%	68.1	7.51%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e0	-1.756e-02	1.0000	12.0	1.24%	22.3	2.46%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e0	-1.742e-02	1.0000	5.0	0.52%	12.0	1.33%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e0	-1.723e-02	1.0000	154.0	15.91%	177.7	19.60%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e0	-1.369e-02	1.0000	13.0	1.34%	24.4	2.69%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e0	-1.205e-02	1.0000	15.0	1.55%	27.8	3.07%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e0	-1.125e-02	1.0000	7.0	0.72%	16.4	1.81%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-1.086e-02	1.0000	35.0	3.62%	52.9	5.83%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-1.053e-02	1.0000	5.0	0.52%	14.0	1.54%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e0	-9.828e-03	1.0000	81.0	8.37%	104.6	11.53%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-8.782e-03	1.0000	31.0	3.20%	48.5	5.34%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e0	-8.048e-03	1.0000	2.0	0.21%	8.3	0.91%
E-box/Drosophila-Promoters/Homer	AACAGCTGTTHN	1e0	-8.048e-03	1.0000	2.0	0.21%	8.0	0.88%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e0	-6.602e-03	1.0000	36.0	3.72%	55.1	6.08%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e0	-4.374e-03	1.0000	7.0	0.72%	18.3	2.02%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-4.219e-03	1.0000	2.0	0.21%	9.8	1.08%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e0	-4.035e-03	1.0000	18.0	1.86%	35.0	3.86%
TATA-box/SacCer-Promoters/Homer	BBHWTATATA	1e0	-3.132e-03	1.0000	22.0	2.27%	40.8	4.50%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e0	-1.911e-03	1.0000	18.0	1.86%	36.1	3.98%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e0	-7.680e-04	1.0000	11.0	1.14%	28.1	3.10%
Trl(Zf)/S2-GAGAfactor-ChIP-Seq(GSE40646)/Homer	RGAGAGAG	1e0	-4.290e-04	1.0000	53.0	5.48%	85.6	9.44%
SEP3(MADS)/Arabidoposis-Flower-Sep3-ChIP-Seq/Homer	CCAAAAAGGG	1e0	-4.500e-05	1.0000	22.0	2.27%	51.0	5.63%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e0	-5.000e-06	1.0000	92.0	9.50%	147.9	16.31%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e0	-1.000e-06	1.0000	6.0	0.62%	31.1	3.43%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	-0.000e+00	1.0000	0.0	0.00%	2.5	0.27%
FHY3(FAR1)/Arabidopsis-FHY3-ChIP-Seq(GSE30711)/Homer	HHCACGCGCBTN	1e0	-0.000e+00	1.0000	0.0	0.00%	2.0	0.22%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-0.000e+00	1.0000	0.0	0.00%	2.0	0.22%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e0	-0.000e+00	1.0000	0.0	0.00%	2.8	0.30%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-0.000e+00	1.0000	0.0	0.00%	2.5	0.28%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e0	-0.000e+00	1.0000	0.0	0.00%	2.0	0.23%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e0	-0.000e+00	1.0000	0.0	0.00%	1.4	0.15%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	-0.000e+00	1.0000	0.0	0.00%	2.0	0.22%
DREF/Drosophila-Promoters/Homer	AVYTATCGATAD	1e0	-0.000e+00	1.0000	0.0	0.00%	1.5	0.17%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-0.000e+00	1.0000	0.0	0.00%	1.8	0.20%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-0.000e+00	1.0000	0.0	0.00%	1.4	0.16%
GEI-11(Myb?)/cElegans-L4-GEI11-ChIP-Seq(modEncode)/Homer	CCGACAYYTYACGGG	1e0	-0.000e+00	1.0000	0.0	0.00%	1.6	0.18%
EFL-1(E2F)/cElegans-L1-EFL1-ChIP-Seq(modEncode)/Homer	TGCAARYGCGCTCYA	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
LIN-15B(Zf)/cElegans-L3-LIN15B-ChIP-Seq(modEncode)/Homer	CARTGGAGCGCRYTTGCATT	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	0.000e+00	1.0000	0.0	0.00%	0.7	0.08%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
Unknown3/Drosophila-Promoters/Homer	ACVAKCTGGCAGCGC	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	0.000e+00	1.0000	0.0	0.00%	0.6	0.07%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	0.000e+00	1.0000	0.0	0.00%	0.4	0.04%
Unknown2/Arabidopsis-Promoters/Homer	AAACGACGTCGTTTT	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
 Ik-1	NHTTGGGAATRCC	1e0	0.000e+00	1.0000	968.0	100.00%	906.8	100.00%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e0	0.000e+00	1.0000	0.0	0.00%	4.8	0.53%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e0	0.000e+00	1.0000	0.0	0.00%	4.1	0.45%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	0.000e+00	1.0000	0.0	0.00%	5.9	0.65%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	0.000e+00	1.0000	0.0	0.00%	7.6	0.84%