Information for 1-GTTCACGC (Motif 1)


Reverse Opposite:

p-value:1e-29
log p-value:-6.903e+01
Information Content per bp:1.636
Number of Target Sequences with motif154.0
Percentage of Target Sequences with motif8.79%
Number of Background Sequences with motif19.0
Percentage of Background Sequences with motif1.05%
Average Position of motif in Targets38.7 +/- 18.0bp
Average Position of motif in Background45.0 +/- 23.1bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Ct/dmmpmm(Noyes_hd)/fly

Match Rank:1
Score:0.82
Offset:-2
Orientation:reverse strand
Alignment:--GTTCACGC
NNGTTCAAGN

ct/MA0218.1/Jaspar

Match Rank:2
Score:0.78
Offset:0
Orientation:reverse strand
Alignment:GTTCACGC
GTTCAA--

lin-14/MA0261.1/Jaspar

Match Rank:3
Score:0.75
Offset:-2
Orientation:reverse strand
Alignment:--GTTCACGC
GTGTTC----

MA0261.1_lin-14/Jaspar

Match Rank:4
Score:0.75
Offset:-2
Orientation:reverse strand
Alignment:--GTTCACGC
GTGTTC----

RTG3/Literature(Harbison)/Yeast

Match Rank:5
Score:0.71
Offset:0
Orientation:forward strand
Alignment:GTTCACGC
GGTCAC--

Ahr::Arnt/MA0006.1/Jaspar

Match Rank:6
Score:0.69
Offset:3
Orientation:reverse strand
Alignment:GTTCACGC-
---CACGCA

Mitf/MA0620.1/Jaspar

Match Rank:7
Score:0.67
Offset:0
Orientation:forward strand
Alignment:GTTCACGC--
GGTCACGTGG

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:8
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-GTTCACGC---
AGGTCAAGGTCA

PB0057.1_Rxra_1/Jaspar

Match Rank:9
Score:0.67
Offset:-7
Orientation:reverse strand
Alignment:-------GTTCACGC--
NTNNNGGGGTCANGNNN

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:10
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-GTTCACGC
AGGTCA---