Information for 8-CGTCTGTA (Motif 11)


Reverse Opposite:

p-value:1e-14
log p-value:-3.310e+01
Information Content per bp:1.872
Number of Target Sequences with motif97.0
Percentage of Target Sequences with motif5.54%
Number of Background Sequences with motif19.2
Percentage of Background Sequences with motif1.06%
Average Position of motif in Targets35.8 +/- 20.5bp
Average Position of motif in Background38.6 +/- 14.1bp
Strand Bias (log2 ratio + to - strand density)-0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---CGTCTGTA
VBSYGTCTGG-

HMRA2/MA0318.1/Jaspar

Match Rank:2
Score:0.65
Offset:2
Orientation:forward strand
Alignment:CGTCTGTA--
--CATGTAAT

MATALPHA2/MA0328.2/Jaspar

Match Rank:3
Score:0.65
Offset:2
Orientation:forward strand
Alignment:CGTCTGTA--
--CGTGTAAT

PB0151.1_Myf6_2/Jaspar

Match Rank:4
Score:0.64
Offset:-4
Orientation:reverse strand
Alignment:----CGTCTGTA---
GGNGCGNCTGTTNNN

ara/MA0210.1/Jaspar

Match Rank:5
Score:0.64
Offset:4
Orientation:reverse strand
Alignment:CGTCTGTA-
----TGTTA

PB0044.1_Mtf1_1/Jaspar

Match Rank:6
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----CGTCTGTA----
GGGCCGTGTGCAAAAA

SPL4/MA1058.1/Jaspar

Match Rank:7
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:CGTCTGTA--
-NNCCGTACN

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:8
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-CGTCTGTA
CTGTCTGG-

mirr/MA0233.1/Jaspar

Match Rank:9
Score:0.61
Offset:4
Orientation:reverse strand
Alignment:CGTCTGTA-
----TGTTT

POL009.1_DCE_S_II/Jaspar

Match Rank:10
Score:0.61
Offset:2
Orientation:forward strand
Alignment:CGTCTGTA
--GCTGTG