Information for 12-GGTCATGA (Motif 15)


Reverse Opposite:

p-value:1e-11
log p-value:-2.620e+01
Information Content per bp:1.794
Number of Target Sequences with motif118.0
Percentage of Target Sequences with motif6.74%
Number of Background Sequences with motif38.3
Percentage of Background Sequences with motif2.11%
Average Position of motif in Targets36.0 +/- 19.9bp
Average Position of motif in Background42.0 +/- 21.5bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MAFG::NFE2L1/MA0089.1/Jaspar

Match Rank:1
Score:0.79
Offset:1
Orientation:reverse strand
Alignment:GGTCATGA
-GTCATN-

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:2
Score:0.74
Offset:-1
Orientation:forward strand
Alignment:-GGTCATGA
AGGTCA---

Hr46/dmmpmm(Bergman)/fly

Match Rank:3
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-GGTCATGA
GGGTCA---

PH0073.1_Hoxc9/Jaspar

Match Rank:4
Score:0.71
Offset:-3
Orientation:forward strand
Alignment:---GGTCATGA-----
GGAGGTCATTAATTAT

WRKY40/MA1085.1/Jaspar

Match Rank:5
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-GGTCATGA
TGGTCAAC-

PB0057.1_Rxra_1/Jaspar

Match Rank:6
Score:0.69
Offset:-7
Orientation:reverse strand
Alignment:-------GGTCATGA--
NTNNNGGGGTCANGNNN

RORA/MA0071.1/Jaspar

Match Rank:7
Score:0.69
Offset:-5
Orientation:forward strand
Alignment:-----GGTCATGA
ATCAAGGTCA---

NR2F1/MA0017.2/Jaspar

Match Rank:8
Score:0.69
Offset:-4
Orientation:forward strand
Alignment:----GGTCATGA-
CAAAGGTCAAGGG

pb/dmmpmm(Noyes)/fly

Match Rank:9
Score:0.68
Offset:0
Orientation:forward strand
Alignment:GGTCATGA-
GGTAATTAA

PB0049.1_Nr2f2_1/Jaspar

Match Rank:10
Score:0.68
Offset:-7
Orientation:forward strand
Alignment:-------GGTCATGA-
TCTCAAAGGTCACGAG