Information for 10-AGTTCAAAAC (Motif 17)


Reverse Opposite:

p-value:1e-11
log p-value:-2.578e+01
Information Content per bp:1.597
Number of Target Sequences with motif36.0
Percentage of Target Sequences with motif2.06%
Number of Background Sequences with motif0.6
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets32.2 +/- 19.6bp
Average Position of motif in Background53.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.73
Offset:0
Orientation:forward strand
Alignment:AGTTCAAAAC
ACATCAAAGG

Unknown6/Drosophila-Promoters/Homer

Match Rank:2
Score:0.72
Offset:-1
Orientation:forward strand
Alignment:-AGTTCAAAAC
AATTTTAAAA-

LIN54/MA0619.1/Jaspar

Match Rank:3
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:AGTTCAAAAC
NATTCAAAT-

TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer

Match Rank:4
Score:0.67
Offset:0
Orientation:forward strand
Alignment:AGTTCAAAAC
ACWTCAAAGG

pan/dmmpmm(Pollard)/fly

Match Rank:5
Score:0.67
Offset:1
Orientation:forward strand
Alignment:AGTTCAAAAC
-GATCAAAG-

TCF7L2/MA0523.1/Jaspar

Match Rank:6
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--AGTTCAAAAC--
AAAGATCAAAGGAA

Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer

Match Rank:7
Score:0.65
Offset:0
Orientation:forward strand
Alignment:AGTTCAAAAC--
ACATCAAAGGNA

br-Z1/dmmpmm(Down)/fly

Match Rank:8
Score:0.64
Offset:0
Orientation:forward strand
Alignment:AGTTCAAAAC
ATAATAATA-

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:9
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--AGTTCAAAAC
CGGTTTCAAA--

PB0068.1_Sox1_1/Jaspar

Match Rank:10
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----AGTTCAAAAC--
AATCAATTCAATAATT