Information for 2-CCCAGCAA (Motif 2)


Reverse Opposite:

p-value:1e-27
log p-value:-6.426e+01
Information Content per bp:1.612
Number of Target Sequences with motif293.0
Percentage of Target Sequences with motif16.73%
Number of Background Sequences with motif97.7
Percentage of Background Sequences with motif5.38%
Average Position of motif in Targets37.3 +/- 21.4bp
Average Position of motif in Background33.0 +/- 25.3bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.16
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

ACE2/MA0267.1/Jaspar

Match Rank:1
Score:0.79
Offset:0
Orientation:forward strand
Alignment:CCCAGCAA
ACCAGCA-

SWI5/MA0402.1/Jaspar

Match Rank:2
Score:0.78
Offset:-1
Orientation:reverse strand
Alignment:-CCCAGCAA
AACCAGCA-

SWI5(MacIsaac)/Yeast

Match Rank:3
Score:0.77
Offset:-1
Orientation:reverse strand
Alignment:-CCCAGCAA
AACCAGCA-

SWI5/Literature(Harbison)/Yeast

Match Rank:4
Score:0.76
Offset:1
Orientation:reverse strand
Alignment:CCCAGCAA
-CCAGCA-

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:5
Score:0.73
Offset:-1
Orientation:forward strand
Alignment:-CCCAGCAA---
SCCTAGCAACAG

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:6
Score:0.71
Offset:-3
Orientation:forward strand
Alignment:---CCCAGCAA----
CCGCATAGCAACGGA

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:7
Score:0.71
Offset:-2
Orientation:reverse strand
Alignment:--CCCAGCAA
TGCCCAGNHW

PB0206.1_Zic2_2/Jaspar

Match Rank:8
Score:0.70
Offset:-3
Orientation:forward strand
Alignment:---CCCAGCAA----
CCACACAGCAGGAGA

ACE2/ACE2_YPD/2-SWI5(Harbison)/Yeast

Match Rank:9
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:CCCAGCAA
ACCAGCA-

PB0055.1_Rfx4_1/Jaspar

Match Rank:10
Score:0.69
Offset:-3
Orientation:forward strand
Alignment:---CCCAGCAA----
TACCATAGCAACGGT