Information for 10-RAGATCATGYCA (Motif 21)


Reverse Opposite:

p-value:1e-10
log p-value:-2.319e+01
Information Content per bp:1.702
Number of Target Sequences with motif40.0
Percentage of Target Sequences with motif2.28%
Number of Background Sequences with motif2.8
Percentage of Background Sequences with motif0.16%
Average Position of motif in Targets33.1 +/- 14.1bp
Average Position of motif in Background35.3 +/- 8.2bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

JUN/MA0488.1/Jaspar

Match Rank:1
Score:0.67
Offset:0
Orientation:forward strand
Alignment:RAGATCATGYCA-
AAGATGATGTCAT

JUND(var.2)/MA0492.1/Jaspar

Match Rank:2
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-RAGATCATGYCA--
AAAGATGATGTCATC

SREBF2/MA0596.1/Jaspar

Match Rank:3
Score:0.64
Offset:3
Orientation:reverse strand
Alignment:RAGATCATGYCA-
---ATCACCCCAT

ZmHOX2a(2)(HD-HOX)/Zea mays/AthaMap

Match Rank:4
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:RAGATCATGYCA
CAGATCA-----

c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer

Match Rank:5
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:RAGATCATGYCA-
-NGATGACGTCAT

GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer

Match Rank:6
Score:0.63
Offset:-5
Orientation:forward strand
Alignment:-----RAGATCATGYCA---
NNNNNBAGATAWYATCTVHN

Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer

Match Rank:7
Score:0.62
Offset:1
Orientation:forward strand
Alignment:RAGATCATGYCA-
-CNGTCACGCCAC

ECM23/MA0293.1/Jaspar

Match Rank:8
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-RAGATCATGYCA
AAAGATCTAAA--

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:9
Score:0.61
Offset:7
Orientation:forward strand
Alignment:RAGATCATGYCA---
-------TGTCANYT

MEIS3/MA0775.1/Jaspar

Match Rank:10
Score:0.60
Offset:5
Orientation:reverse strand
Alignment:RAGATCATGYCA-
-----CCTGTCAA