Information for 18-AGGTAGATAT (Motif 23)


Reverse Opposite:

p-value:1e-9
log p-value:-2.225e+01
Information Content per bp:1.716
Number of Target Sequences with motif61.0
Percentage of Target Sequences with motif3.48%
Number of Background Sequences with motif11.2
Percentage of Background Sequences with motif0.62%
Average Position of motif in Targets36.5 +/- 20.3bp
Average Position of motif in Background30.7 +/- 12.1bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

FOXB1/MA0845.1/Jaspar

Match Rank:1
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-AGGTAGATAT
TATGTAAATAT

FOXC1/MA0032.2/Jaspar

Match Rank:2
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-AGGTAGATAT
TATGTAAATAT

SPT15/MA0386.1/Jaspar

Match Rank:3
Score:0.70
Offset:-4
Orientation:forward strand
Alignment:----AGGTAGATAT-------
GACTAGATATATATATTCGAT

LHY(Myb)/Seedling-LHY-ChIP-Seq(GSE52175)/Homer

Match Rank:4
Score:0.70
Offset:4
Orientation:reverse strand
Alignment:AGGTAGATAT----
----AGATATTTHT

CCA1/MA0972.1/Jaspar

Match Rank:5
Score:0.69
Offset:4
Orientation:reverse strand
Alignment:AGGTAGATAT--
----AGATATTT

PB0126.1_Gata5_2/Jaspar

Match Rank:6
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-AGGTAGATAT------
GACAGAGATATCAGTGT

FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer

Match Rank:7
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-AGGTAGATAT
WAAGTAAAYA-

bin/dmmpmm(Bergman)/fly

Match Rank:8
Score:0.67
Offset:2
Orientation:forward strand
Alignment:AGGTAGATAT
--ATAAATA-

Cf2/MA0015.1/Jaspar

Match Rank:9
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:AGGTAGATAT--
--NTATATATAC

Cf2/dmmpmm(Bergman)/fly

Match Rank:10
Score:0.66
Offset:3
Orientation:reverse strand
Alignment:AGGTAGATAT--
---TATATATAC