Information for 11-ATCACGAGGTCA (Motif 24)


Reverse Opposite:

p-value:1e-9
log p-value:-2.073e+01
Information Content per bp:1.619
Number of Target Sequences with motif33.0
Percentage of Target Sequences with motif1.88%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.10%
Average Position of motif in Targets34.7 +/- 18.4bp
Average Position of motif in Background37.3 +/- 18.4bp
Strand Bias (log2 ratio + to - strand density)0.9
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0057.1_Rxra_1/Jaspar

Match Rank:1
Score:0.74
Offset:0
Orientation:reverse strand
Alignment:ATCACGAGGTCA-----
NTNNNGGGGTCANGNNN

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:2
Score:0.73
Offset:6
Orientation:forward strand
Alignment:ATCACGAGGTCA
------AGGTCA

Nr2f6(var.2)/MA0728.1/Jaspar

Match Rank:3
Score:0.73
Offset:-3
Orientation:forward strand
Alignment:---ATCACGAGGTCA
GAGGTCAAAAGGTCA

NR4A2/MA0160.1/Jaspar

Match Rank:4
Score:0.71
Offset:5
Orientation:forward strand
Alignment:ATCACGAGGTCA-
-----AAGGTCAC

RORA/MA0071.1/Jaspar

Match Rank:5
Score:0.71
Offset:2
Orientation:forward strand
Alignment:ATCACGAGGTCA
--ATCAAGGTCA

Rarg/MA0859.1/Jaspar

Match Rank:6
Score:0.71
Offset:-3
Orientation:forward strand
Alignment:---ATCACGAGGTCA-
AAGGTCAAAAGGTCAA

NR2F1/MA0017.2/Jaspar

Match Rank:7
Score:0.70
Offset:3
Orientation:forward strand
Alignment:ATCACGAGGTCA----
---CAAAGGTCAAGGG

Rarb/MA0857.1/Jaspar

Match Rank:8
Score:0.69
Offset:-4
Orientation:forward strand
Alignment:----ATCACGAGGTCA
AAAGGTCAAAAGGTCA

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.69
Offset:3
Orientation:reverse strand
Alignment:ATCACGAGGTCA-
---TCAAGGTCAN

RARA/MA0729.1/Jaspar

Match Rank:10
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---ATCACGAGGTCA---
GAGGTCAAAAGGTCAATG